Evidence map›Paper›PMID 30560907›Full record

ArticleNature communications2018

SCL/TAL1 cooperates with Polycomb RYBP-PRC1 to suppress alternative lineages in blood-fated cells.

Hedia Chagraoui, Maiken S Kristiansen, Juan Pablo Ruiz, Ana Serra-Barros, Johanna Richter, Elisa Hall-Ponselé, Nicki Gray, Dominic Waithe, Kevin Clark, Philip Hublitz and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Transcription Factor TAL1 in Erythropoiesis.Advances in experimental medicine and biology · 2024
    Review
  7. Review
  8. Review
  9. Sensitive cluster-free differential expression testing.bioRxiv : the preprint server for biology · 2023
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 3 countries.

Hedia ChagraouiMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Maiken S KristiansenMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Juan Pablo RuizMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Ana Serra-BarrosMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Johanna RichterMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Elisa Hall-PonseléMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Nicki GrayComputational Biology Research Group, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Dominic WaitheWolfson Imaging Centre, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.ORCID http://orcid.org/0000-0003-2685-4226
Kevin ClarkFACS Facility, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Philip HublitzGenome Engineering Facility, Medical Research Council Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.ORCID http://orcid.org/0000-0001-8810-3247
Emmanouela RepapiComputational Biology Research Group, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.ORCID http://orcid.org/0000-0001-8085-0731
Georg OttoMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.ORCID http://orcid.org/0000-0002-3929-948X
Paul SoppFACS Facility, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Stephen TaylorComputational Biology Research Group, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Supat ThongjueaComputational Biology Research Group, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.
Paresh VyasMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.ORCID http://orcid.org/0000-0003-3931-0914
Catherine PorcherMedical Research Council Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK. catherine.porcher@imm.ox.ac.uk.ORCID http://orcid.org/0000-0002-9015-5203
John Radcliffe Hospital · GBGreat Ormond Street Hospital · GB

Funding

Medical Research Council G0900747Medical Research Council G0902418Medical Research Council G1000729Medical Research Council MC_U137961146Medical Research Council MC_UU_00016/11Medical Research Council MC_UU_00016/9Medical Research Council MC_UU_12009/11Medical Research Council MC_UU_12009/9Medical Research Council MR/L008963/1Medical Research Council MR/S005382/1Wellcome Trust
6 · The paper itself

Abstract

During development, it is unclear if lineage-fated cells derive from multilineage-primed progenitors and whether active mechanisms operate to restrict cell fate. Here we investigate how mesoderm specifies into blood-fated cells. We document temporally restricted co-expression of blood (Scl/Tal1), cardiac (Mesp1) and paraxial (Tbx6) lineage-affiliated transcription factors in single cells, at the onset of blood specification, supporting the existence of common progenitors. At the same time-restricted stage, absence of SCL results in expansion of cardiac/paraxial cell populations and increased cardiac/paraxial gene expression, suggesting active suppression of alternative fates. Indeed, SCL normally activates expression of co-repressor ETO2 and Polycomb-PRC1 subunits (RYBP, PCGF5) and maintains levels of Polycomb-associated histone marks (H2AK119ub/H3K27me3). Genome-wide analyses reveal ETO2 and RYBP co-occupy most SCL target genes, including cardiac/paraxial loci. Reduction of Eto2 or Rybp expression mimics Scl-null cardiac phenotype. Therefore, SCL-mediated transcriptional repression prevents mis-specification of blood-fated cells, establishing active repression as central to fate determination processes.

Indexed as

AnimalsCell DifferentiationCell LineCell LineageCell SeparationEmbryo, MammalianFlow CytometryGene Expression Regulation, DevelopmentalHistone CodeMesodermMiceMouse Embryonic Stem CellsNuclear ProteinsPolycomb-Group ProteinsPolycomb Repressive Complex 1Repressor ProteinsCbfa2t3 protein, mouseNuclear ProteinsPcgf5 protein, mousePolycomb-Group ProteinsPolycomb Repressive Complex 1Repressor ProteinsRNA, Small InterferingRybp protein, mouseTal1 protein, mouseT-Cell Acute Lymphocytic Leukemia Protein 1Transcription Factors

Identifiers

PMID30560907
PMCPMC6299140
OpenAlexW2903766360

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.