Evidence map›Paper›PMID 30560869›Full record

ArticleScientific reports2018

Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery.

Takahiro G Yamada, Yoshitaka Suetsugu, Ruslan Deviatiiarov, Oleg Gusev, Richard Cornette, Alexander Nesmelov, Noriko Hiroi, Takahiro Kikawada, Akira Funahashi

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. A sodium-dependent trehalose transporter contributes to anhydrobiosis in insect cell line, Pv11.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Takahiro G YamadaDepartment of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan.ORCID http://orcid.org/0000-0002-1665-1778
Yoshitaka SuetsuguInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, 305-8634, Japan.
Ruslan DeviatiiarovKazan Federal University, Kazan, Tatarstan, 420008, Russia.
Oleg GusevKazan Federal University, Kazan, Tatarstan, 420008, Russia.
Richard CornetteInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, 305-8634, Japan.
Alexander NesmelovKazan Federal University, Kazan, Tatarstan, 420008, Russia.
Noriko HiroiFaculty of Pharmaceutical Science, Sanyo-Onoda City University, Sanyo-Onoda, Yamaguchi, 756-0884, Japan.
Takahiro KikawadaInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, 305-8634, Japan. kikawada@affrc.go.jp.ORCID http://orcid.org/0000-0002-2329-9282
Akira FunahashiDepartment of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, 223-8522, Japan. funa@bio.keio.ac.jp.ORCID http://orcid.org/0000-0003-0605-239X

Funding

Japan Society for the Promotion of Science (JSPS) 16K07308Japan Society for the Promotion of Science (JSPS) 17H01511Japan Society for the Promotion of Science (JSPS) 25128714Russian Science Foundation (RSF) 17-44-00003
6 · The paper itself

Abstract

The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki embryo, shows desiccation tolerance when treated with trehalose before desiccation and resumes proliferation after rehydration. However, the molecular mechanisms of this desiccation tolerance remain unknown. Here, we performed high-throughput CAGE-seq of mRNA and a differentially expressed gene analysis in trehalose-treated, desiccated, and rehydrated Pv11 cells, followed by gene ontology analysis of the identified differentially expressed genes. We detected differentially expressed genes after trehalose treatment involved in various stress responses, detoxification of harmful chemicals, and regulation of oxidoreduction that were upregulated. In the desiccation phase, L-isoaspartyl methyltransferase and heat shock proteins were upregulated and ribosomal proteins were downregulated. Analysis of differentially expressed genes during rehydration supported the notion that homologous recombination, nucleotide excision repair, and non-homologous recombination were involved in the recovery process. This study provides initial insights into the molecular mechanisms underlying the extreme desiccation tolerance of Pv11 cells.

Indexed as

Gene Expression ProfilingTranscriptomeAdaptation, BiologicalAnimalsCell LineComputational BiologyDehydrationDesiccationDNA RepairGene OntologyInsectaLarvaStress, PhysiologicalTrehaloseTrehalose

Identifiers

PMID30560869
PMCPMC6298976

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.