Evidence map›Paper›PMID 30560866›Full record

ArticleNature communications2018

Local mutational diversity drives intratumoral immune heterogeneity in non-small cell lung cancer.

Qingzhu Jia, Wei Wu, Yuqi Wang, Peter B Alexander, Chengdu Sun, Zhihua Gong, Jia-Nan Cheng, Huaibo Sun, Yanfang Guan, Xuefeng Xia and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 318 papers.

0numbers the graph read from it
0cells of the map it votes in
318citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

318 citing papers in PubMed.

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  18. SLC2A1Nature cell biology · 2026
    Article
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258 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Qingzhu JiaInstitute of Cancer, Xinqiao Hospital, Third Military Medical University, Chongqing, 400037, China.
Wei WuDepartment of Cardiothorathic Surgery, Southwest Hospital, Third Military Medical University, Chongqing, 400038, China.
Yuqi WangGeneplus-Beijing Institute, Beijing, 102206, China.
Peter B AlexanderDepartment of Immunology, Duke University Medical Center, Durham, 27710, NC, USA.
Chengdu SunInstitute of Cancer, Xinqiao Hospital, Third Military Medical University, Chongqing, 400037, China.
Zhihua GongInstitute of Cancer, Xinqiao Hospital, Third Military Medical University, Chongqing, 400037, China.
Jia-Nan ChengInstitute of Cancer, Xinqiao Hospital, Third Military Medical University, Chongqing, 400037, China.
Huaibo SunGeneplus-Beijing Institute, Beijing, 102206, China.
Yanfang GuanGeneplus-Beijing Institute, Beijing, 102206, China.
Xuefeng XiaGeneplus-Beijing Institute, Beijing, 102206, China.
Ling YangGeneplus-Beijing Institute, Beijing, 102206, China.
Xin YiGeneplus-Beijing Institute, Beijing, 102206, China.
Yisong Y WanDepartment of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, 27514, NC, USA.
Haidong WangDepartment of Cardiothorathic Surgery, Southwest Hospital, Third Military Medical University, Chongqing, 400038, China.
Ji HeGeneCast Biotechnology Co., Ltd, Beijing, 102206, China.
P Andrew FutrealDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Qi-Jing LiDepartment of Immunology, Duke University Medical Center, Durham, 27710, NC, USA. Qi-Jing.Li@Duke.edu.
Bo ZhuInstitute of Cancer, Xinqiao Hospital, Third Military Medical University, Chongqing, 400037, China. bo.zhu@tmmu.edu.cn.

Funding

Area A: Development of genetically tractable, driver gene-syngeneic brain tumor models for pre-clinical adoptive TCR-T therapyR33CA225328 · NCI · DUKE UNIVERSITY · PI ASHLEY, DAVID M., LI, QIJING · 2017 to 2017
$1.5M
NCI NIH HHS R33 CA225328NIH HHS R33CA225328
6 · The paper itself

Abstract

Combining whole exome sequencing, transcriptome profiling, and T cell repertoire analysis, we investigate the spatial features of surgically-removed biopsies from multiple loci in tumor masses of 15 patients with non-small cell lung cancer (NSCLC). This revealed that the immune microenvironment has high spatial heterogeneity such that intratumoral regional variation is as large as inter-personal variation. While the local total mutational burden (TMB) is associated with local T-cell clonal expansion, local anti-tumor cytotoxicity does not directly correlate with neoantigen abundance. Together, these findings caution against that immunological signatures can be predicted solely from TMB or microenvironmental analysis from a single locus biopsy.

Indexed as

Antigens, NeoplasmBiopsyCarcinoma, Non-Small-Cell LungDNA Mutational AnalysisExome SequencingGene Expression ProfilingHumansLungLung NeoplasmsMutationT-LymphocytesTumor MicroenvironmentAntigens, Neoplasm

Identifiers

PMID30560866
PMCPMC6299138

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.