Evidence map›Paper›PMID 30560489›Full record

ArticleFood and environmental virology2019

The First Molecular Detection of Aichi Virus 1 in Raw Sewage and Mussels Collected in South Africa.

Oikwathaile Onosi, Nicole S Upfold, Michael D Jukes, Garry A Luke, Caroline Knox

Abstract read
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In one paragraph

Article in Food and environmental virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  12. The Circulation of Type FPathogens (Basel, Switzerland) · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Oikwathaile OnosiDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa.
Nicole S UpfoldDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa. nicole.s.upfold@gmail.com.ORCID 0000-0001-8556-0370
Michael D JukesDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa.
Garry A LukeCentre for Biomolecular Sciences, School of Biology, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Scotland, KY16 9ST, UK.
Caroline KnoxDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aichi virus 1 (AiV-1) has a worldwide distribution and is associated with gastroenteritis in humans. In this study, raw sewage and mussel samples were analyzed for the presence of AiV-1 using reverse transcription-PCR (RT-PCR). Amplification and sequencing of the 3CD and VP1 genomic regions followed by phylogenetic analysis using selected genome sequences revealed the presence of AiV-1, genotype B. The results highlight the importance of further screening to evaluate the prevalence and epidemiology of this clinically important virus in South Africa.

Indexed as

AnimalsBivalviaKobuvirusPhylogenyPolymerase Chain ReactionSewageSouth AfricaSewageAichi virus 1KobuvirusMusselsPicornaviridaeWaste water

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.