Evidence map›Paper›PMID 30560061›Full record

ArticleBiomolecular detection and quantification2018

Algorithms for automated detection of hook effect-bearing amplification curves.

Michał Burdukiewicz, Andrej-Nikolai Spiess, Konstantin A Blagodatskikh, Werner Lehmann, Peter Schierack, Stefan Rödiger

Abstract read
In one paragraph

Article in Biomolecular detection and quantification, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Life (Basel, Switzerland) · 2021
    Article
  6. AScall - Automatic Allele-Specific qPCR Analysis.Frontiers in bioengineering and biotechnology · 2020
    Article
  7. qPCR data analysis: Better results through iconoclasm.Biomolecular detection and quantification · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michał BurdukiewiczTechnical University of Warsow, Warsow, Poland.
Andrej-Nikolai SpiessUniversity Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Konstantin A BlagodatskikhPirogov Russian National Research Medical University, Moscow, Russia.
Werner LehmannAttomol GmbH, Lipten, Germany.
Peter SchierackInstitute of Biotechnology, Brandenburg University of Technology Cottbus - Senftenberg, Senftenberg, Germany.
Stefan RödigerInstitute of Biotechnology, Brandenburg University of Technology Cottbus - Senftenberg, Senftenberg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amplification curves from quantitative Real-Time PCR experiments typically exhibit a sigmoidal shape. They can roughly be divided into a ground or baseline phase, an exponential amplification phase, a linear phase and finally a plateau phase, where in the latter, the PCR product concentration no longer increases. Nevertheless, in some cases the plateau phase displays a negative trend, e.g. in hydrolysis probe assays. This cycle-to-cycle fluorescence decrease is commonly referred to in the literature as the

Indexed as

AutomationEvaGreenHook effectLinearNonlinearQPCRRDMLSybrGreenTaqMan

Identifiers

PMID30560061
PMCPMC6287529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.