Evidence map›Paper›PMID 30559963›Full record

ArticleCancer & metabolism2018

Transport-exclusion pharmacology to localize lactate dehydrogenase activity within cells.

Xiangfeng Niu, Ying-Jr Chen, Peter A Crawford, Gary J Patti

Open access · goldAbstract read
In one paragraph

Article in Cancer & metabolism, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Glycolytic ATP production enables rapid mammalian cell growth.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Systems level profiling of chemotherapy-induced stress resolution in cancer cells reveals druggable trade-offs.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Toward spatially resolved metabolomics.Nature chemical biology · 2020
    Article
  12. Leveraging insights into cancer metabolism-a symposium report.Annals of the New York Academy of Sciences · 2020
    Review
  13. A Metabolism Toolbox for CAR T Therapy.Frontiers in oncology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Xiangfeng Niu *1Department of Chemistry, Washington University, St. Louis, USA.
Ying-Jr Chen *1Department of Chemistry, Washington University, St. Louis, USA.
Peter A Crawford2Division of Molecular Medicine, Department of Medicine, University of Minnesota, Minneapolis, USA.
Gary J Patti1Department of Chemistry, Washington University, St. Louis, USA.ORCID 0000-0002-3748-6193
Washington University in St. Louis · USUniversity of Minnesota · US

Funding

KETONE BODY METABOLISM AND INTEGRATED METABOLIC HOMEOSTASISR01DK091538 · NIDDK · WASHINGTON UNIVERSITY · PI CRAWFORD, PETER A · 2011 to 2024
$6.2M
Developing Metabolomic Technologies to Advance Environmental Exposure AnalysisR35ES028365 · NIEHS · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2017 to 2024
$5.9M
A COMPREHENSIVE RESOURCE FOR HIGH-THROUGHPUT PROFILING OF WORM AND ZEBRAFISH METABOLOMESR24OD024624 · OD · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2018 to 2021
$4.0M
A Comprehensive Platform for High-Throughput Profiling of the Human Reference MetabolomeU01CA235482 · NCI · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2018 to 2021
$1.8M
NCATS NIH HHS L30 TR000589NCI NIH HHS U01 CA235482NIDDK NIH HHS R01 DK091538NIEHS NIH HHS R35 ES028365NIH HHS R24 OD024624
6 · The paper itself

Abstract

backgroundRecent

methodsWithin most mammalian cells, metabolic processes are physically separated by membrane-bound compartments. Our general understanding of this spatial organization and its role in cellular function, however, suffers from the limited number of techniques to localize enzymatic activities within a cell. Here, we describe an approach to assess metabolic compartmentalization by monitoring the activity of pharmacological inhibitors that cannot be transported into specific cellular compartments.

resultsOxamate, which chemically resembles pyruvate, is transported into mitochondria and inhibits LDH activity in purified mitochondria. GSK-2837808A, in contrast, is a competitive inhibitor of NAD, which cannot cross the inner mitochondrial membrane. GSK-2837808A did not inhibit the LDH activity of intact mitochondria, but GSK-2837808A did inhibit LDH activity after the inner mitochondrial membrane was disrupted.

conclusionsOur results are consistent with some mitochondrial LDH that is accessible to oxamate, but inaccessible to GSK-2837808A until mitochondria are homogenized. This strategy of using inhibitors with selective access to subcellular compartments, which we refer to as transport-exclusion pharmacology, is broadly applicable to localize other metabolic reactions within cells.

Indexed as

LactateLactate dehydrogenaseRedox balanceTransport-exclusion pharmacology

Identifiers

PMID30559963
PMCPMC6290536
OpenAlexW2902498279

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.