Evidence map›Paper›PMID 30559729›Full record

ArticleFrontiers in microbiology2018

Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea.

Hang Yu, Dwi Susanti, Shawn E McGlynn, Connor T Skennerton, Karuna Chourey, Ramsunder Iyer, Silvan Scheller, Patricia L Tavormina, Robert L Hettich, Biswarup Mukhopadhyay and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
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  9. Review
  10. Ethane-oxidising archaea couple CONature communications · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structures of the sulfite detoxifying FNature chemical biology · 2023
    Article
  16. Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Nitrite reductase activity in FAccess microbiology · 2023
    Article
  18. Article
  19. A Reduced FJournal of bacteriology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Hang YuDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, United States.
Dwi SusantiDepartment of Biochemistry, Virginia Tech, Blacksburg, VA, United States.
Shawn E McGlynnDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, United States.
Connor T SkennertonDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, United States.
Karuna ChoureyChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.
Ramsunder IyerChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.
Silvan SchellerDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, United States.
Patricia L TavorminaDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, United States.
Robert L HettichChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.
Biswarup MukhopadhyayDepartment of Biochemistry, Virginia Tech, Blacksburg, VA, United States.
Victoria J OrphanDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, United States.
California Institute of Technology · USOak Ridge National Laboratory · USVirginia Tech · USUniversity of Tennessee at Knoxville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfate is the predominant electron acceptor for anaerobic oxidation of methane (AOM) in marine sediments. This process is carried out by a syntrophic consortium of anaerobic methanotrophic archaea (ANME) and sulfate reducing bacteria (SRB) through an energy conservation mechanism that is still poorly understood. It was previously hypothesized that ANME alone could couple methane oxidation to dissimilatory sulfate reduction, but a genetic and biochemical basis for this proposal has not been identified. Using comparative genomic and phylogenetic analyses, we found the genetic capacity in ANME and related methanogenic archaea for sulfate reduction, including sulfate adenylyltransferase, APS kinase, APS/PAPS reductase and two different sulfite reductases. Based on characterized homologs and the lack of associated energy conserving complexes, the sulfate reduction pathways in ANME are likely used for assimilation but not dissimilation of sulfate. Environmental metaproteomic analysis confirmed the expression of 6 proteins in the sulfate assimilation pathway of ANME. The highest expressed proteins related to sulfate assimilation were two sulfite reductases, namely assimilatory-type low-molecular-weight sulfite reductase (alSir) and a divergent group of coenzyme F

Indexed as

anaerobic oxidation of methaneANMEAPS/PAPS Reductasesulfate adenylyltransferasesulfate reductionsulfite reductasesulfur pathwaysyntrophy

Identifiers

PMID30559729
PMCPMC6286981
OpenAlexW2902778700

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.