Evidence map›Paper›PMID 30559386›Full record

ArticleScientific reports2018

Complete genome analysis of a Siphoviridae phage TSK1 showing biofilm removal potential against Klebsiella pneumoniae.

Rabia Tabassum, Muafia Shafique, Komal Amer Khawaja, Iqbal Ahmed Alvi, Yasir Rehman, Cody S Sheik, Zaigham Abbas, Shafiq Ur Rehman

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 88 citations in OpenAlex.

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  13. Isolation, characterization and therapeutic evaluation of phage HHU1 against K2Frontiers in cellular and infection microbiology · 2025
    Article
  14. Article
  15. A NovelCurrent issues in molecular biology · 2024
    Article
  16. A NewPharmaceutics · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Rabia TabassumDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
Muafia ShafiqueDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
Komal Amer KhawajaDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
Iqbal Ahmed AlviDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
Yasir RehmanDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
Cody S SheikSwenson College of Science and Engineering, University of Minnesota Duluth, Duluth, USA.
Zaigham AbbasDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
Shafiq Ur RehmanDepartment of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan. shafiq.mmg@pu.edu.pk.
University of the Punjab · PKUniversity of Minnesota, Duluth · US

Funding

Alabama Commission on Higher Education 4501Higher Education Commission, Pakistan (HEC) 4501
6 · The paper itself

Abstract

Multidrug-resistant Klebsiella pneumoniae is a nosocomial pathogen, produces septicemia, pneumonia and UTI. Excessive use of antibiotics contributes towards emergence of multidrug-resistance. Bacteriophage-therapy is a potential substitute of antibiotics with many advantages. In this investigation, microbiological and genome characterization of TSK1 bacteriophage and its biofilm elimination capability are presented. TSK1 showed narrow host range and highest stability at pH 7 and 37 °C. TSK1 reduced the growth of K. pneumoniae during the initial 14 hours of infection. Post-treatment with TSK1 against different age K. pneumoniae biofilms reduced 85-100% biomass. Pre-treatment of TSK1 bacteriophage against the biofilm of Klebsiella pneumoniae reduced > 99% biomass in initial 24 hr of incubation. The genome of TSK1 phage comprised 49,836 base pairs with GC composition of 50.44%. Total seventy-five open reading frames (ORFs) were predicted, 25 showed homology with known functional proteins, while 50 were called hypothetical, as no homologs with proved function exists in the genome databases. Blast and phylogenetic analysis put it in the Kp36 virus genus of family Siphoviridae. Proposed packaging strategy of TSK1 bacteriophage genome is headful packaging using the pac sites. The potential of TSK1 bacteriophage could be used to reduce the bacterial load and biofilm in clinical and non-clinical settings.

Indexed as

Anti-Bacterial AgentsBacteriophagesBase CompositionBiofilmsDrug Resistance, Multiple, BacterialGenome, ViralHost SpecificityKlebsiella pneumoniaeOpen Reading FramesPhylogenySiphoviridaeAnti-Bacterial Agents

Identifiers

PMID30559386
PMCPMC6297243
OpenAlexW2905291356

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.