Evidence map›Paper›PMID 30559369›Full record

ArticleNature communications2018

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.

José F Muñoz, Lalitha Gade, Nancy A Chow, Vladimir N Loparev, Phalasy Juieng, Elizabeth L Berkow, Rhys A Farrer, Anastasia P Litvintseva, Christina A Cuomo

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 305 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
305citing papers in PubMed, 1 pooled it
26.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

305 citing papers in PubMed, 1 synthesis or guideline pooled it, 461 citations in OpenAlex.

  1. Global characteristics and trends in research onFrontiers in microbiology · 2023
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Validation of molecular detection ofMicrobiology spectrum · 2026
    Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Insights on molecular drivers of phenotypic plasticity in Candidozyma auris.World journal of microbiology & biotechnology · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. mBio · 2026
    Article
  18. Microbiology spectrum · 2026
    Article
  19. Article
  20. Journal of fungi (Basel, Switzerland) · 2026
    Review

245 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

José F MuñozBroad Institute of MIT and Harvard, Cambridge, MA, 02144, USA.ORCID http://orcid.org/0000-0003-4987-7957
Lalitha GadeMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, 30333, GA, USA.
Nancy A ChowMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, 30333, GA, USA.
Vladimir N LoparevBiotechnology Core Facility Branch, Centers for Disease Control and Prevention, Atlanta, 30333, GA, USA.
Phalasy JuiengBiotechnology Core Facility Branch, Centers for Disease Control and Prevention, Atlanta, 30333, GA, USA.
Elizabeth L BerkowMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, 30333, GA, USA.
Rhys A FarrerBroad Institute of MIT and Harvard, Cambridge, MA, 02144, USA.ORCID http://orcid.org/0000-0001-8456-7458
Anastasia P LitvintsevaMycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, 30333, GA, USA. frq8@cdc.gov.
Christina A CuomoBroad Institute of MIT and Harvard, Cambridge, MA, 02144, USA. cuomo@broadinstitute.org.ORCID http://orcid.org/0000-0002-5778-960X
Centers for Disease Control and Prevention · USBroad Institute · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
NIAID NIH HHS U19 AI110818
6 · The paper itself

Abstract

Candida auris is an emergent multidrug-resistant fungal pathogen causing increasing reports of outbreaks. While distantly related to C. albicans and C. glabrata, C. auris is closely related to rarely observed and often multidrug-resistant species from the C. haemulonii clade. Here, we analyze near complete genome assemblies for the four C. auris clades and three related species, and map intra- and inter-species rearrangements across the seven chromosomes. Using RNA-Seq-guided gene predictions, we find that most mating and meiosis genes are conserved and that clades contain either the MTLa or MTLα mating loci. Comparing the genomes of these emerging species to those of other Candida species identifies genes linked to drug resistance and virulence, including expanded families of transporters and lipases, as well as mutations and copy number variants in ERG11. Gene expression analysis identifies transporters and metabolic regulators specific to C. auris and those conserved with related species which may contribute to differences in drug response in this emerging fungal clade.

Indexed as

Antifungal AgentsCandidaCandidiasisCommunicable Diseases, EmergingCytochrome P-450 Enzyme SystemDrug Resistance, Multiple, FungalGenome, FungalMicrobial Sensitivity TestsVirulenceWhole Genome SequencingAntifungal AgentsCytochrome P-450 Enzyme System

Identifiers

PMID30559369
PMCPMC6297351
OpenAlexW2951867871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.