Evidence map›Paper›PMID 30559291›Full record

ArticleThe Journal of biological chemistry2019

Retinal degeneration 3 (RD3) protein, a retinal guanylyl cyclase regulator, forms a monomeric and elongated four-helix bundle.

Igor V Peshenko, Qinhong Yu, Sunghyuk Lim, Diana Cudia, Alexander M Dizhoor, James B Ames

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. cGMP Signaling in Photoreceptor Degeneration.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. The Journal of biological chemistry · 2020
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Igor V PeshenkoFrom the Pennsylvania College of Optometry, Salus University, Elkins Park, Pennsylvania 19027 and.
Qinhong Yuthe Department of Chemistry, University of California, Davis, California 95616.ORCID 0000-0003-3855-5469
Sunghyuk Limthe Department of Chemistry, University of California, Davis, California 95616.
Diana Cudiathe Department of Chemistry, University of California, Davis, California 95616.
Alexander M DizhoorFrom the Pennsylvania College of Optometry, Salus University, Elkins Park, Pennsylvania 19027 and adizhoor@salus.edu.
James B Amesthe Department of Chemistry, University of California, Davis, California 95616 jbames@ucdavis.edu.ORCID 0000-0003-0934-2595
University of California, Davis · USSalus University · USUniversity of California System · US

Funding

REGULATION OF CYCLIC GMP SYNTHESIS IN PHOTORECEPTORSR01EY011522 · NEI · WAYNE STATE UNIVERSITY · PI ALEXANDER M DIZHOOR · 1996 to 2026
$9.9M
MEMBRANE TARGETING CALCIUM SENSORS IN VISIONR01EY012347 · NEI · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI AMES, JAMES B · 1999 to 2023
$6.9M
NEI NIH HHS R01 EY011522NEI NIH HHS R01 EY012347
6 · The paper itself

Abstract

Retinal degeneration 3 (RD3) protein promotes accumulation of retinal membrane guanylyl cyclase (RetGC) in the photoreceptor outer segment and suppresses RetGC activation by guanylyl cyclase-activating proteins (GCAPs). Mutations truncating RD3 cause severe congenital blindness by preventing the inhibitory binding of RD3 to the cyclase. The high propensity of RD3 to aggregate in solution has prevented structural analysis. Here, we produced a highly soluble variant of human RD3 (residues 18-160) that is monomeric and can still bind and negatively regulate RetGC. The NMR solution structure of RD3 revealed an elongated backbone structure (70 Å long and 30 Å wide) consisting of a four-helix bundle with a long unstructured loop between helices 1 and 2. The structure reveals that RD3 residues previously implicated in the RetGC binding map to a localized and contiguous area on the structure, involving a loop between helices 2 and 3 and adjacent parts of helices 3 and 4. The NMR structure of RD3 was validated by mutagenesis. Introducing Trp

Indexed as

Amino Acid SubstitutionAnimalsCattleEye ProteinsGuanylate CyclaseHEK293 CellsHumansHydrophobic and Hydrophilic InteractionsMutation, MissenseNuclear Magnetic Resonance, BiomolecularProtein DomainsProtein Structure, SecondaryReceptors, Cell SurfaceEye ProteinsGuanylate Cyclaseguanylate cyclase 1RD3 protein, humanReceptors, Cell Surfaceguanylate cyclase (guanylyl cyclase)nuclear magnetic resonance (NMR)photoreceptorphototransductionretinal degeneration

Identifiers

PMID30559291
PMCPMC6378972
OpenAlexW2904597921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.