Evidence map›Paper›PMID 30558885›Full record

ArticleBiophysical journal2019

Convection-Induced Biased Distribution of Actin Probes in Live Cells.

Sawako Yamashiro, Daisuke Taniguchi, Soichiro Tanaka, Tai Kiuchi, Dimitrios Vavylonis, Naoki Watanabe

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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  13. Lamellipodium tip actin barbed ends serve as a force sensor.Genes to cells : devoted to molecular & cellular mechanisms · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sawako YamashiroLaboratory of Single-Molecule Cell Biology, Kyoto University Graduate School of Medicine, Kyoto Japan; Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto Japan. Electronic address: yamashiro.sawako.5c@kyoto-u.ac.jp.
Daisuke TaniguchiDepartment of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto Japan.
Soichiro TanakaLaboratory of Single-Molecule Cell Biology, Tohoku University Graduate School of Life Sciences, Sendai, Miyagi, Japan.
Tai KiuchiDepartment of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto Japan.
Dimitrios VavylonisDepartment of Physics, Lehigh University, Bethlehem, Pennsylvania.
Naoki WatanabeLaboratory of Single-Molecule Cell Biology, Kyoto University Graduate School of Medicine, Kyoto Japan; Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto Japan. Electronic address: watanabe.naoki.4v@kyoto-u.ac.jp.
Kyoto University · JPLehigh University · USTohoku University · JP

Funding

Theoretical and experimental studies of distributed actin turnoverR01GM114201 · NIGMS · LEHIGH UNIVERSITY · PI VAVYLONIS, DIMITRIOS · 2016 to 2019
$1.1M
NIGMS NIH HHS R01 GM114201
6 · The paper itself

Abstract

Fluorescent markers that bind endogenous target proteins are frequently employed for quantitative live-cell imaging. To visualize the actin cytoskeleton in live cells, several actin-binding probes have been widely used. Among them, Lifeact is the most popular probe with ideal properties, including fast exchangeable binding kinetics. Because of its fast kinetics, Lifeact is generally believed to distribute evenly throughout cellular actin structures. In this study, however, we demonstrate misdistribution of Lifeact toward the rear of lamellipodia where actin filaments continuously move inward along the retrograde flow. Similarly, phalloidin showed biased misdistribution toward the rear of lamellipodia in live cells. We show evidence of convection-induced misdistribution of actin probes by both experimental data and physical models. Our findings warn about the potential error arising from the use of target-binding probes in quantitative live imaging.

Indexed as

ConvectionActin CytoskeletonActinsAnimalsCells, CulturedFluorescent DyesGoldfishMicroscopy, FluorescenceProtein BindingPseudopodiaXenopus laevisActinsFluorescent Dyes

Identifiers

PMID30558885
PMCPMC6342703
OpenAlexW2901476079

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.