Evidence map›Paper›PMID 30558597›Full record

ArticleMalaria journal2018

Origins and spread of novel genetic variants of sulfadoxine-pyrimethamine resistance in Plasmodium falciparum isolates in Indonesia.

Sukmawati Basuki, Fitriah, Petronella M Risamasu, Kasmijati, Pancawati Ariami, Sugeng Riyanto, Ari Hidayat, Dewi Susilowati, Iskandar, Budi Armika and 4 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. High Frequency Mutations inFrontiers in cellular and infection microbiology · 2021
    Article
  5. Article
  6. Profiling antimalarial drug-resistant haplotypes inTherapeutic advances in infectious disease
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Sukmawati BasukiDepartment of Medical Parasitology, Faculty of Medicine, Universitas Airlangga, Surabaya, Indonesia.
FitriahMalaria Study Group/Laboratory of Malaria, Institute of Tropical Disease, Universitas Airlangga, Surabaya, Indonesia.
Petronella M RisamasuDisease Control of Jayapura District Department of Health, Jayapura, Papua Province, Indonesia.
KasmijatiUPTD, Puskesmas Kuala Pembuang, Seruyan District, Middle Kalimantan Province, Indonesia.
Pancawati AriamiPoltekkes Mataram, Kota Mataram, Lombok, West Nusa Tenggara Province, Indonesia.
Sugeng RiyantoBanjar District Department of Health, Martapura, Banjar, South Kalimantan Province, Indonesia.
Ari HidayatArifin Achmad Hospital, Pekanbaru, Riau Province, Indonesia.
Dewi SusilowatiFaculty of Public Health, Universitas Gorontalo, Biyonga, Limboto, Gorontalo Province, Indonesia.
IskandarPuskesmas Utan Rhee, Utan Rhee sub-district, Sumbawa, West Nusa Tenggara Province, Indonesia.
Budi ArmikaWest Nusa Tenggara Provincial Department of Health, Kota Mataram, Lombok, West Nusa Tenggara Province, Indonesia.
BudionoDepartment of Public Health and Preventive Medicine, Faculty of Medicine, Universitas Airlangga, Surabaya, Indonesia.
Yoes P DachlanDepartment of Medical Parasitology, Faculty of Medicine, Universitas Airlangga, Surabaya, Indonesia.
Hiroji KanbaraDepartment of Protozoology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.
Haruki UemuraDepartment of Protozoology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan. uemura@nagasaki-u.ac.jp.
Airlangga University · IDNagasaki University · JPUniversitas GorontaloUniversitas Nusa Tenggara Barat · ID

Funding

Japan Society for the Promotion of Science JP16H05817Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia 018/SP2H/LT/DRPM/II/2016
6 · The paper itself

Abstract

backgroundWhile malaria incidence in Indonesia has decreased threefold in the last decade, more than 200,000 cases were reported in 2016. Different endemicity of Plasmodium falciparum malaria among several islands in Indonesia has been recognized and two unique mutations of P. falciparum dihydropteroate synthase (pfdhps) affecting sulfadoxine-pyrimethamine (SP) resistance were detected from the research of SP efficiency and genotype analysis in South Kalimantan. In this study, geographical distribution and origin of these pfdhps K540T and I588F mutations were analysed.

methodsMalaria parasites DNA from several endemic areas in Indonesia; Sumatera, Java, Kalimantan, Lombok, Sumbawa, Timor, Sulawesi, and Papua islands; in two periods, 2004-2006 and 2009-2012 were subjected for pfdhfr and pfdhps sequence analysis.

resultsDifferent genotype polymorphisms of pfdhfr and pfdhps were observed in the parasites from various regions in Indonesia and relatively more divergent genotypes were determined from Kalimantan isolates in both 2004-2006 and 2009-2012. The parasites containing K540T mutation were identified in 2004-2006 isolates from East Kalimantan, East Java and Sumbawa as an SGTGA haplotype. The other I588F mutation was also determined in 2004-2006 parasites, isolated from Lombok and Sumbawa islands as an SGEAA(588F) haplotype. The parasites with pfdhfr/pfdhps quintuple or sextuple mutation, a genotype marker of SP resistance, were determined mostly in Kalimantan in both 2004-2006 and 2009-2012.

conclusionAnalysis of the prevalence and pfdhfr/pfdhps combined genotypes of K540T or I588F mutations suggested that K540T might be origin in Kalimantan Island and I588F in Sumbawa Island and then these were spread to other areas along with people movement. This research indicates regular monitoring of drug efficacy and parasite genotype analysis is important to keep efficiency and prevent the spread of resistance. It is also essential for the latest anti-malarial drug artemisinin-based combination therapy.

Indexed as

Polymorphism, GeneticAntimalarialsDihydropteroate SynthaseDrug CombinationsDrug ResistanceIndonesiaMutationPlasmodium falciparumProtozoan ProteinsPyrimethamineSulfadoxineAntimalarialsDihydropteroate SynthaseDrug Combinationsfanasil, pyrimethamine drug combinationProtozoan ProteinsPyrimethamineSulfadoxineIndonesiaMutationPfdhfrPfdhpsPlasmodium falciparumPolymorphism

Identifiers

PMID30558597
PMCPMC6298019
OpenAlexW2905323284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.