Evidence map›Paper›PMID 30558587›Full record

ArticleMalaria journal2018

Prevalence of molecular markers of sulfadoxine-pyrimethamine and artemisinin resistance in Plasmodium falciparum from Pakistan.

Adnan Yaqoob, Aamer Ali Khattak, Muhammad Faisal Nadeem, Huma Fatima, Gillian Mbambo, Amed Ouattara, Matthew Adams, Nadia Zeeshan, Shannon Takala-Harrison

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genomic characterization ofFrontiers in cellular and infection microbiology · 2022
    Article
  5. Article
  6. Article
  7. High Frequency Mutations inFrontiers in cellular and infection microbiology · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Molecular detection of antimalarial drug resistance inPathogens (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Adnan YaqoobDepartment of Biochemistry & Biotechnology, University of Gujrat, Gujrat, Pakistan.
Aamer Ali KhattakDepartment of Medical Laboratory Technology, University of Haripur, Haripur, KPK, Pakistan.
Muhammad Faisal NadeemDepartment of Biochemistry & Biotechnology, University of Gujrat, Gujrat, Pakistan.
Huma FatimaDepartment of Animal Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Gillian MbamboCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, USA.
Amed OuattaraCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, USA.
Matthew AdamsCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, USA.
Nadia ZeeshanDepartment of Biochemistry & Biotechnology, University of Gujrat, Gujrat, Pakistan.
Shannon Takala-HarrisonCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, USA. STakala@som.umaryland.edu.ORCID http://orcid.org/0000-0003-4674-8500
University of Maryland, Baltimore · USUniversity of Gujrat · PKQuaid-i-Azam University · PKUniversity of Haripur · PK

Funding

Identification and validation of molecular markers of piperaquine resistanceR01AI125579 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI HARRISON, SHANNON TAKALA · 2017 to 2021
$1.6M
National Institutes of Health R01 AI125579NIAID NIH HHS R01 AI125579
6 · The paper itself

Abstract

backgroundIn Pakistan, artesunate (AS) in combination with sulfadoxine-pyrimethamine (SP) is the recommended treatment for uncomplicated Plasmodium falciparum malaria. Monitoring molecular markers of anti-malarial drug resistance is crucial for early detection and containment of parasite resistance to treatment. Currently, no data are available on molecular markers of artemisinin resistance (K13 mutations) in P. falciparum isolates from Pakistan. In this study, the prevalence of mutations associated with SP and artemisinin resistance was estimated in different regions of Pakistan.

methodsA total of 845 blood samples that were positive for malaria parasites by microscopy or rapid diagnostic test were collected from January 2016 to February 2017 from 16 different sites in Pakistan. Of these samples, 300 were positive for P. falciparum by PCR. Polymorphisms in the P. falciparum dihydrofolate reductase (pfdhfr) and dihydropteroate synthase (pfdhps) genes were identified by pyrosequencing while polymorphisms in the propeller domain of the pfk13 gene were identified by Sanger sequencing.

resultsThe prevalence of the PfDHFR 108N and 59R mutations was 100% and 98.8%, respectively, while the prevalence of PfDHFR 50R and 51I mutations was 8.6%. No mutation was observed at PfDHFR position 164. In PfDHPS, the prevalence of mutations at positions 436, 437, and 613 was 9.9%, 45.2%, and 0.4%, respectively. No mutations were found at PfDHPS positions 540 and 581. The prevalence of double PfDHFR mutants (59R + 108N) ranged from 93.8% to 100%, while the prevalence of parasites having the PfDHFR 59R + 108N mutations in addition to the PfDHPS 437G mutation ranged from 9.5% to 83.3% across different regions of Pakistan. Nine non-synonymous and four synonymous mutations were observed in the PfK13 propeller domain, none of which correspond to mutations validated to contribute to artemisinin resistance.

conclusionThe absence of the highly resistant PfDHFR/PfDHPS quintuple mutant parasites and the lack of PfK13 mutations associated with artemisinin resistance is consistent with AS + SP being effective in Pakistan.

Indexed as

Drug ResistancePolymorphism, GeneticAntimalarialsArtemisininsBiomarkersDihydropteroate SynthaseDrug CombinationsMutationPakistanPlasmodium falciparumProtozoan ProteinsPyrimethamineSulfadoxineTetrahydrofolate DehydrogenaseAntimalarialsArtemisininsBiomarkersDHFR protein, Plasmodium falciparumDihydropteroate SynthaseDrug CombinationsProtozoan ProteinsPyrimethamineSulfadoxinesulfadoxine-pyrimethamine-artesunateTetrahydrofolate DehydrogenaseDrug resistanceMalariaPakistanPlasmodium falciparum

Identifiers

PMID30558587
PMCPMC6296135
OpenAlexW2904820255

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.