ArticleBMC genomics2018
DAWN: a resource for yielding insights into the diversity among wheat genomes.
Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed.
- Identifying and Characterizing Candidate Genes Contributing to a Grain Yield QTL in Wheat.Plants (Basel, Switzerland) · 2023Article
- The effects of crop attributes, selection, and recombination on Canadian bread wheat molecular variation.The plant genome · 2021Article
- The wheat Seven in absentia gene is associated with increases in biomass and yield in hot climates.Journal of experimental botany · 2021Article
- Ph2 encodes the mismatch repair protein MSH7-3D that inhibits wheat homoeologous recombination.Nature communications · 2021Article
- A Major Locus on Wheat Chromosome 7B Associated With Late-Maturity α-Amylase Encodes a PutativeFrontiers in plant science · 2021Article
- Integrating Wheat Nucleolus Structure and Function: Variation in the Wheat Ribosomal RNA and Protein Genes.Frontiers in plant science · 2021Review
- TheFrontiers in plant science · 2021Article
- Article
- QTL analysis and fine mapping of a QTL for yield-related traits in wheat grown in dry and hot environments.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- High-resolution mapping of rachis nodes per rachis, a critical determinant of grain yield components in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Genetic Dissection of Resistance to the Three Fungal Plant PathogensG3 (Bethesda, Md.) · 2019Article
- Article
- Novel Alleles for Combined Drought and Heat Stress Tolerance in Wheat.Frontiers in plant science · 2019Article
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5 authors.
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Abstract
backgroundDemocratising the growing body of whole genome sequencing data available for Triticum aestivum (bread wheat) has been impeded by the lack of a genome reference and the large computational requirements for analysing these data sets.
resultsDAWN (Diversity Among Wheat geNomes) integrates data from the T. aestivum Chinese Spring (CS) IWGSC RefSeq v1.0 genome with public WGS and exome data from 17 and 62 accessions respectively, enabling researchers and breeders alike to investigate genotypic differences between wheat accessions at the level of whole chromosomes down to individual genes.
conclusionsUsing DAWN we show that it is possible to visualise small and large chromosomal deletions, identify haplotypes at a glance and spot the consequences of selective breeding. DAWN allows us to detect the break points of alien introgression segments brought into an accession when transferring desired genes. Furthermore, we can find possible explanations for reduced recombination in parts of a chromosome, we can predict regions with linkage drag, and also look at diversity in centromeric regions.
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