Evidence map›Paper›PMID 30556005›Full record

ArticleACS omega2018

Transprotein-Electropore Characterization: A Molecular Dynamics Investigation on Human AQP4.

Paolo Marracino, Mario Bernardi, Micaela Liberti, Federico Del Signore, Erika Trapani, José-Antonio Gárate, Christian J Burnham, Francesca Apollonio, Niall J English

Open access · goldAbstract read
In one paragraph

Article in ACS omega, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Biophysical principles of pulsed field ablation.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2026
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  10. Electro-opening of a microtubule lattice in silico.Computational and structural biotechnology journal · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Paolo MarracinoDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy.
Mario BernardiDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy.
Micaela LibertiDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy.
Federico Del SignoreDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy.
Erika TrapaniDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy.
José-Antonio GárateCentro Interdisciplinario de neurociencia de Valparaiso, Universidad de Valparaiso, 05101 Valparaiso, Chile.
Christian J BurnhamSchool of Chemical and Bioprocess Engineering, University College Dublin, Belfield, D4 Dublin, Ireland.
Francesca ApollonioDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy.
Niall J EnglishSchool of Chemical and Bioprocess Engineering, University College Dublin, Belfield, D4 Dublin, Ireland.
Sapienza University of Rome · ITUniversity College Dublin · IEUniversity of Valparaíso · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Electroporation characterization is a topic of intensive interest probed by extensive ongoing research efforts. Usually, these studies are carried out on lipid-bilayer electroporation. Surprisingly, the possibility of water-channel electropore formation across transmembrane proteins themselves, particularly in view of such a promising application, has not yet been elucidated. The present work examines the geometrical and kinetic aspects of electropores and their stability in such a protein milieux (as opposed through the phospholipid membranes) in depth, by means of scrutiny of such a process in human-AQP4 as a well-representative prototype. The residues forming the electropore's walls, organized in loops, reveal the formation mechanism by their dipole alignment and translational response in response to applied axial electric fields in nonequilibrium molecular dynamics simulation. The magnitude of sustaining electric fields (keeping a stable electropore open) were determined. This suggests that transmembrane proteins could play a central role in electroporation applications, e.g., in medicine and biotechnology.

Identifiers

PMID30556005
PMCPMC6288775
OpenAlexW2901352282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.