Evidence map›Paper›PMID 30555231›Full record

ArticleInternational journal of nanomedicine2018

Gold nanoparticles - an optical biosensor for RNA quantification for cancer and neurologic disorders diagnosis.

Sherif M Shawky, Ahmed M Awad, Arwa A Abugable, Sherif F El-Khamisy

Abstract read
In one paragraph

Article in International journal of nanomedicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sherif M ShawkyCenter for Genomics, Helmy Institute for Medical Sciences, Zewail City of Science and Technology, Giza, Egypt, s.el-khamisy@sheffield.ac.uk.
Ahmed M AwadCenter for Genomics, Helmy Institute for Medical Sciences, Zewail City of Science and Technology, Giza, Egypt, s.el-khamisy@sheffield.ac.uk.
Arwa A AbugableCenter for Genomics, Helmy Institute for Medical Sciences, Zewail City of Science and Technology, Giza, Egypt, s.el-khamisy@sheffield.ac.uk.
Sherif F El-KhamisyCenter for Genomics, Helmy Institute for Medical Sciences, Zewail City of Science and Technology, Giza, Egypt, s.el-khamisy@sheffield.ac.uk.

Funding

Wellcome Trust
6 · The paper itself

Abstract

purposeThe objective of this study is to develop a facile tool for the absolute detection and quantification of nucleic acid transcripts, using a gold nanoparticle-based optical biosensor. Topoisomerase 1 (TOP1) and tyrosyl DNA phosphodiesterase 2 (TDP2) were among the nucleic acid transcripts of choice due to their role as genomic instability biomarkers and their implication in various cancers and neurologic disorders. This opens the door to develop a simple tool that can be used for diagnosing and monitoring treatment response for such diseases, overcoming the requirements for high cost, time, and complexity of the existing technologies for the absolute quantification of transcripts of interest. MATERIALS AND

methodsThe TOP1 and TDP2 mRNA transcripts were first captured specifically using magnetic nanoparticles that were functionalized with TOP1- and TDP2-specific probes, respectively. The captured mRNA was then directly detected and quantified using the gold aggregating gold (GAG) assay, without the need for amplification as in existing technologies used for the quantification of transcripts.

resultsA linear correlation exists between the GAG assay and the qPCR for the quantification of the TOP1 and TDP2 mRNA transcripts (10

conclusionThe GAG assay can be utilized as an inexpensive, rapid, simple, and sensitive tool for the absolute quantification of RNA for different applications, instead of the laborious, expensive, and sophisticated real-time PCR.

Indexed as

Biosensing TechniquesBiological AssayDNA-Binding ProteinsDNA Topoisomerases, Type IGoldHumansMetal NanoparticlesNeoplasmsNervous System DiseasesNuclear ProteinsPhosphoric Diester HydrolasesRNA, MessengerTranscription FactorsDNA-Binding ProteinsDNA Topoisomerases, Type IGoldNuclear ProteinsPhosphoric Diester HydrolasesRNA, MessengerTDP2 protein, humanTOP1 protein, humanTranscription Factorsgenomic instabilitygold aggregating goldmagnetic nanoparticlesneurodegenerative diseasesRNA extractionTDP2TOP1tumor markers

Identifiers

PMID30555231
PMCPMC6278840

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.