Evidence map›Paper›PMID 30554333›Full record

ArticleVirchows Archiv : an international journal of pathology2019

TP53 inactivation and expression of methylation-associated proteins in gastric adenocarcinoma with enteroblastic differentiation.

Noboru Yatagai, Tsuyoshi Saito, Yoichi Akazawa, Takuo Hayashi, Yuka Yanai, Sho Tsuyama, Hiroya Ueyama, Takashi Murakami, Sumio Watanabe, Akihito Nagahara and 1 more

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Article in Virchows Archiv : an international journal of pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Gastric Adenocarcinoma with Enteroblastic Differentiation.Pathobiology : journal of immunopathology, molecular and cellular biology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The relationship between P16Scientific reports · 2022
    Article
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Noboru YatagaiDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.
Tsuyoshi SaitoDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan. tysaitou@juntendo.ac.jp.ORCID http://orcid.org/0000-0001-9690-8440
Yoichi AkazawaDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.
Takuo HayashiDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.
Yuka YanaiDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.
Sho TsuyamaDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.
Hiroya UeyamaDepartment of Gastroenterology, Graduate School of Medicine, Juntendo University, Tokyo, 113-8421, Japan.
Takashi MurakamiDepartment of Gastroenterology, Graduate School of Medicine, Juntendo University, Tokyo, 113-8421, Japan.
Sumio WatanabeDepartment of Gastroenterology, Graduate School of Medicine, Juntendo University, Tokyo, 113-8421, Japan.
Akihito NagaharaDepartment of Gastroenterology, Graduate School of Medicine, Juntendo University, Tokyo, 113-8421, Japan.
Takashi YaoDepartment of Human Pathology, Graduate School of Medicine, Juntendo University, 2-1-1 Hongo, Bunkyo-Ku, Tokyo, 113-8421, Japan.
Juntendo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastric adenocarcinoma with enteroblastic differentiation (GAED) is a rare variant of aggressive adenocarcinoma. We demonstrated previously that GAED is genetically characterized by frequent TP53 mutation. In this study, we aimed to further clarify the mechanism of inactivation of TP53 in GAED in the light of promoter methylation of TP53, and expression of methylation-associated proteins such as Ten-eleven translocation (TET) 1 and 5-hydroxymethylcytosine (5-hmc) in addition to ATM mutations. We analyzed 51 cases of GAED. The ATM mutation was detected in only one case. Promoter methylation of TP53 was detected in 18% and frequency of loss of heterozygosity (LOH) at TP53 locus was 37.2%. Reduced TET1 expression was found in 29 cases (56.9%) and was significantly associated with advanced stage (p = 0.01), lymph node metastasis (p = 0.04), and macroscopic type (p = 0.01). Reduced 5-hmc expression was found in 28 cases (54.9%) and was significantly associated with advanced stage (p = 0.01), gender (p = 0.01), tumor location (p = 0.03), tumor size (p = 0.01), and lymph node metastasis (p = 0.01). Among 9 cases with TP53 promoter methylation, reduced expression of TET1 was observed in 6 cases, and reduced expression of 5-hmc was observed in 5 cases. Reduced expression of both TET1 and 5-hmc was significantly associated with adverse clinical outcomes. In summary, promoter methylation of TP53 is partly involved in loss of p53 expression. Aberrant methylation by reduced TET1 and 5-hmc may be involved in the development of aggressive GAED.

Indexed as

Biomarkers, TumorCell DifferentiationDNA MethylationGene Silencing5-MethylcytosineAdenocarcinomaAgedAged, 80 and overAtaxia Telangiectasia Mutated ProteinsFemaleHumansLoss of HeterozygosityLymphatic MetastasisMaleMiddle AgedMixed Function Oxygenases5-hydroxymethylcytosine5-MethylcytosineAtaxia Telangiectasia Mutated ProteinsATM protein, humanBiomarkers, TumorMixed Function OxygenasesProto-Oncogene ProteinsTET1 protein, humanTP53 protein, humanTumor Suppressor Protein p53Enteroblastic differentiationGastric adenocarcinomaLOHMethylationTET1TP53

Identifiers

PMID30554333
OpenAlexW2904285320

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.