Evidence map›Paper›PMID 30552631›Full record

ArticleJournal of microbiology (Seoul, Korea)2019

Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction.

Zixuan Zhong, Nannan Li, Binghui He, Yasuo Igarashi, Feng Luo

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Plants (Basel, Switzerland) · 2025
    Article
  5. Biological Characteristics and Domestication ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zixuan ZhongResearch Center of Bioenergy and Bioremediation, College of Resources and Environment, Southwest University, Chongqing, 400715, P. R. China.
Nannan LiResearch Center of Bioenergy and Bioremediation, College of Resources and Environment, Southwest University, Chongqing, 400715, P. R. China.
Binghui HeResearch Center of Bioenergy and Bioremediation, College of Resources and Environment, Southwest University, Chongqing, 400715, P. R. China.
Yasuo IgarashiResearch Center of Bioenergy and Bioremediation, College of Resources and Environment, Southwest University, Chongqing, 400715, P. R. China.
Feng LuoResearch Center of Bioenergy and Bioremediation, College of Resources and Environment, Southwest University, Chongqing, 400715, P. R. China. van77@swu.edu.cn.
Southwest University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interspecific mycelial interactions between white rot fungi are always accompanied by an increased production of laccase. In this study, the potential of the white rot fungus Dichomitus squalens to enhance laccase production during interactions with two other white rot fungi, Trametes versicolor or Pleurotus ostreatus, was assessed. To probe the mechanism of laccase induction and the role that laccase plays during combative interaction, we analyzed the differential gene expression profile of the laccase induction response to stressful conditions during fungal interaction. We further confirmed the expression patterns of 16 selected genes by qRT-PCR analysis. We noted that many differentially expressed genes (DEGs) encoded proteins that were involved in xenobiotic detoxification and reactive oxygen species (ROS) generation or reduction, including aldo/keto reductase, glutathione S-transferases, cytochrome P450 enzymes, alcohol oxidases and dehydrogenase, manganese peroxidase and laccase. Furthermore, many DEG-encoded proteins were involved in antagonistic mechanisms of nutrient acquisition and antifungal properties, including glycoside hydrolase, glucanase, chitinase and terpenoid synthases. DEG analyses effectively revealed that laccase induction was likely caused by protective responses to oxidative stress and nutrient competition during interspecific fungal interactions.

Indexed as

Gene Expression ProfilingGene Expression Regulation, EnzymologicGene Expression Regulation, FungalCoculture TechniquesGenes, FungalLaccaseMicrobial InteractionsMyceliumNutrientsOxidative StressPleurotusPolyporaceaeReactive Oxygen SpeciesSequence Analysis, RNATrametesTranscriptomeLaccaseNutrientsReactive Oxygen SpeciesDichomitus squalenslaccasemycelial interactionstranscriptome analysiswhite rot fungi

Identifiers

PMID30552631
OpenAlexW2949751299

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.