Evidence map›Paper›PMID 30552368›Full record

ArticleScientific reports2018

Miniscule differences between sex chromosomes in the giant genome of a salamander.

Melissa C Keinath, Nataliya Timoshevskaya, Vladimir A Timoshevskiy, S Randal Voss, Jeramiah J Smith

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The use of transgenics in the laboratory axolotl.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Review
  6. Gene and transgenics nomenclature for the laboratory axolotl-Ambystoma mexicanum.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  7. Article
  8. Review
  9. Sex chromosomes in meiotic, hemiclonal, clonal and polyploid hybrid vertebrates: along the 'extended speciation continuum'.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  10. A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  11. Large-scale variation in single nucleotide polymorphism density within the laboratory axolotl (Ambystoma mexicanum).Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  12. Comparative genomics ofLife science alliance · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Deciphering the Origin and Evolution of the XInternational journal of molecular sciences · 2019
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Melissa C KeinathDepartment of Biology, University of Kentucky, Lexington, KY, USA. keinath@carnegiescience.edu.ORCID http://orcid.org/0000-0002-7313-0215
Nataliya TimoshevskayaDepartment of Biology, University of Kentucky, Lexington, KY, USA.ORCID http://orcid.org/0000-0002-9775-5877
Vladimir A TimoshevskiyDepartment of Biology, University of Kentucky, Lexington, KY, USA.
S Randal VossDepartment of Neuroscience, Spinal Cord & Brain Injury Research Center (SCoBIRC), & Ambystoma Genetic Stock Center, University of Kentucky, Lexington, KY, USA.
Jeramiah J SmithDepartment of Biology, University of Kentucky, Lexington, KY, USA. jjsmit2@uky.edu.ORCID http://orcid.org/0000-0001-5333-5531
University of Kentucky · US

Funding

Ambystoma Genetic Stock Center - Revision to Include Curation and Informatics ComponentP40OD019794 · OD · UNIVERSITY OF KENTUCKY · PI Stephen Randal Voss · 2015 to 2026
$6.3M
Research Resources for Model AmphibiansR24OD010435 · OD · UNIVERSITY OF KENTUCKY · PI SMITH, JERAMIAH JAMES, VOSS, STEPHEN RANDAL · 2012 to 2025
$5.7M
Functional analysis of programmed genome rearrangementR01GM104123 · NIGMS · UNIVERSITY OF KENTUCKY · PI SMITH, JERAMIAH JAMES · 2013 to 2017
$1.4M
DOD | Army Research Office (ARO) W911NG1110475Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) P40OD019794Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01GM104123Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R24OD010435NIGMS NIH HHS R01 GM104123NIH HHS P40 OD019794NIH HHS R24 OD010435
6 · The paper itself

Abstract

In the Mexican axolotl (Ambystoma mexicanum), sex is determined by a single Mendelian factor, yet its sex chromosomes do not exhibit morphological differentiation typical of many vertebrate taxa that possess a single sex-determining locus. As sex chromosomes are theorized to differentiate rapidly, species with undifferentiated sex chromosomes provide the opportunity to reconstruct early events in sex chromosome evolution. Whole genome sequencing of 48 salamanders, targeted chromosome sequencing and in situ hybridization were used to identify the homomorphic sex chromosome that carries an A. mexicanum sex-determining factor and sequences that are present only on the W chromosome. Altogether, these sequences cover ~300 kb of validated female-specific (W chromosome) sequence, representing ~1/100,000

Indexed as

Sex ChromosomesAmbystoma mexicanumAnimalsIn Situ HybridizationWhole Genome Sequencing

Identifiers

PMID30552368
PMCPMC6294749
OpenAlexW2904111316

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.