Evidence map›Paper›PMID 30552326›Full record

ArticleNature communications2018

miR-122 removal in the liver activates imprinted microRNAs and enables more effective microRNA-mediated gene repression.

Paul N Valdmanis, Hak Kyun Kim, Kirk Chu, Feijie Zhang, Jianpeng Xu, Elizabeth M Munding, Jia Shen, Mark A Kay

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Paul N ValdmanisDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA. paulnv@uw.edu.
Hak Kyun KimDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA.
Kirk ChuDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA.
Feijie ZhangDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA.
Jianpeng XuDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA.
Elizabeth M MundingDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA.
Jia ShenDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA.
Mark A KayDepartment of Pediatrics, Stanford University, Stanford, 94305, CA, USA. markay@stanford.edu.
Stanford University · US

Funding

RNAi for the Treatment of Viral HepatitisR01AI071068 · NIAID · STANFORD UNIVERSITY · PI KAY, MARK A · 2006 to 2020
$6.7M
Acute/chronic limitations to transcriptional RNAi therapies for infectious and other liver diseasesR37AI071068 · NIAID · STANFORD UNIVERSITY · PI Mark A Kay · 2021 to 2026
$4.3M
Studies on RNAi Based Delivery in VivoR01DK078424 · NIDDK · STANFORD UNIVERSITY · PI KAY, MARK A · 2006 to 2014
$4.1M
NIAID NIH HHS R01 AI071068NIAID NIH HHS R37 AI071068NIDDK NIH HHS R01 DK078424
6 · The paper itself

Abstract

miR-122 is a highly expressed liver microRNA that is activated perinatally and aids in regulating cholesterol metabolism and promoting terminal differentiation of hepatocytes. Disrupting expression of miR-122 can re-activate embryo-expressed adult-silenced genes, ultimately leading to the development of hepatocellular carcinoma (HCC). Here we interrogate the liver transcriptome at various time points after genomic excision of miR-122 to determine the cellular consequences leading to oncogenesis. Loss of miR-122 leads to specific and progressive increases in expression of imprinted clusters of microRNAs and mRNA transcripts at the Igf2 and Dlk1-Dio3 loci that could be curbed by re-introduction of exogenous miR-122. mRNA targets of other abundant hepatic microRNAs are functionally repressed leading to widespread hepatic transcriptional de-regulation. Together, this reveals a transcriptomic framework for the hepatic response to loss of miR-122 and the outcome on other microRNAs and their cognate gene targets.

Indexed as

AnimalsCalcium-Binding ProteinsCarcinogenesisCarcinoma, HepatocellularGene Expression ProfilingGene Expression Regulation, NeoplasticHEK293 CellsHepatocytesHumansInsulin-Like Growth Factor IIIntercellular Signaling Peptides and ProteinsIodide PeroxidaseLiverLiver NeoplasmsMembrane ProteinsMiceCalcium-Binding ProteinsDLK1 protein, humanIGF2 protein, humanInsulin-Like Growth Factor IIIntercellular Signaling Peptides and ProteinsIodide Peroxidaseiodothyronine deiodinase type IIIMembrane ProteinsMicroRNAsMirn122 microRNA, mouseRNA, Messenger

Identifiers

PMID30552326
PMCPMC6294001
OpenAlexW2904153475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.