Evidence map›Paper›PMID 30552320›Full record

ArticleNature communications2018

Functional genomic analysis identifies miRNA repertoire regulating C. elegans oocyte development.

Amanda L Minogue, Michael R Tackett, Elnaz Atabakhsh, Genesis Tejada, Swathi Arur

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

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  13. The multifaceted roles of microRNAs in differentiation.Current opinion in cell biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amanda L MinogueProgram in Developmental Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Michael R TackettAbcam, One Kendall Square, Cambridge, MA, 02142, USA.
Elnaz AtabakhshAbcam, One Kendall Square, Cambridge, MA, 02142, USA.
Genesis TejadaAbcam, One Kendall Square, Cambridge, MA, 02142, USA.
Swathi ArurProgram in Developmental Biology, Baylor College of Medicine, Houston, TX, 77030, USA. sarur@mdanderson.org.ORCID http://orcid.org/0000-0002-6941-2711
Abcam (United States) · USThe University of Texas MD Anderson Cancer Center · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Erk-mediated regulation of Dicer and Drosha function in C. elegansR01GM098200 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ARUR, SWATHI · 2011 to 2020
$3.3M
NIGMS NIH HHS R01 GM098200NIH HHS P40 OD010440
6 · The paper itself

Abstract

Oocyte-specific miRNA function remains unclear in mice and worms because loss of Dgcr8 and Dicer from mouse and worm oocytes, respectively, does not yield oogenic defects. These data lead to several models: (a) miRNAs are not generated in oocytes; (b) miRNAs are generated but do not perform an oogenic function; (c) functional oocyte miRNAs are generated in a manner independent of these enzymes. Here, we test these models using a combination of genomic, expression and functional analyses on the C. elegans germline. We identify a repertoire of at least twenty-three miRNAs that accumulate in four spatial domains in oocytes. Genetic tests demonstrate that oocyte-expressed miRNAs regulate key oogenic processes within their respective expression domains. Unexpectedly, we find that over half of the oocyte-expressed miRNAs are generated through an unknown Drosha independent mechanism. Thus, a functional miRNA repertoire generated via Drosha dependent and independent pathways regulates C. elegans oocyte development.

Indexed as

GenomicsAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsFertilityGerm CellsIn Situ HybridizationMeiosisMicroRNAsOocytesOogenesisRibonuclease IIIRNA InterferenceCaenorhabditis elegans Proteinsdrsh-1 protein, C elegansMicroRNAsRibonuclease III

Identifiers

PMID30552320
PMCPMC6294007
OpenAlexW2904320888

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.