Evidence map›Paper›PMID 30552139›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Phototaxis in a wild isolate of the cyanobacterium

Yiling Yang, Vinson Lam, Marie Adomako, Ryan Simkovsky, Annik Jakob, Nathan C Rockwell, Susan E Cohen, Arnaud Taton, Jingtong Wang, J Clark Lagarias and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
11.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Cyanobacteria Under UV Radiation: General Insights into Stress Responses.International journal of molecular sciences · 2025
    Review
  3. Article
  4. Review
  5. Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Responding to light signals: a comprehensive update on photomorphogenesis in cyanobacteria.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Draft Genome Sequences ofJournal of genomics · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Yiling YangCenter for Circadian Biology, University of California, San Diego, La Jolla, CA 92093.
Vinson LamDivision of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
Marie AdomakoDivision of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
Ryan SimkovskyDivision of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-6837-0460
Annik JakobInstitute of Biology III, Faculty of Biology, University of Freiburg, D79104 Freiburg, Germany.
Nathan C RockwellDepartment of Molecular and Cell Biology, University of California, Davis, CA 95616.
Susan E CohenCenter for Circadian Biology, University of California, San Diego, La Jolla, CA 92093.
Arnaud TatonDivision of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
Jingtong WangDivision of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
J Clark LagariasDepartment of Molecular and Cell Biology, University of California, Davis, CA 95616.ORCID 0000-0002-2093-0403
Annegret WildeInstitute of Biology III, Faculty of Biology, University of Freiburg, D79104 Freiburg, Germany.
David R NoblesUTEX Culture Collection of Algae, The University of Texas at Austin, Austin, TX 78712.
Jerry J BrandUTEX Culture Collection of Algae, The University of Texas at Austin, Austin, TX 78712.
Susan S GoldenCenter for Circadian Biology, University of California, San Diego, La Jolla, CA 92093; sgolden@ucsd.edu.ORCID 0000-0002-4264-7019
University of California San Diego · USThe University of Texas at Austin · USUniversity of California, Davis · USUniversity of Freiburg · DECalifornia State University Los Angeles · US

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Undergraduate Summer Research Experience: Molecular and cellular mechanisms of circadian timekeeping in a prokaryote modelR35GM118290 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOLDEN, SUSAN S · 2016 to 2025
$6.7M
NIGMS NIH HHS R35 GM118290NIGMS NIH HHS T32 GM007240
6 · The paper itself

Abstract

Many cyanobacteria, which use light as an energy source via photosynthesis, have evolved the ability to guide their movement toward or away from a light source. This process, termed "phototaxis," enables organisms to localize in optimal light environments for improved growth and fitness. Mechanisms of phototaxis have been studied in the coccoid cyanobacterium

Indexed as

Amino Acid SequenceBacterial ProteinsBiofilmsCyanobacteriaGene Expression Regulation, BacterialPhotoreceptors, MicrobialPhototaxisSynechococcusSynechocystisBacterial ProteinsPhotoreceptors, MicrobialcyanobacteriaGAF domainphotoreceptorphototaxisSynechococcus elongatus

Identifiers

PMID30552139
PMCPMC6310787
OpenAlexW2903678813

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.