Evidence map›Paper›PMID 30550228›Full record

ArticlePolish journal of microbiology

Functional and Transcriptomic Characterization of a Dye-decolorizing Fungus from

DA Cheng Hao, Si Meng Song, Yan Cheng, Zhi Qiang Qin, Guang Bo Ge, Bai Lin An, Pei Gen Xiao

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Polish journal of microbiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

DA Cheng HaoBiotechnology Institute, School of Environment and Chemical Engineering, Dalian Jiaotong University , Dalian , China.
Si Meng SongBiotechnology Institute, School of Environment and Chemical Engineering, Dalian Jiaotong University , Dalian , China.
Yan ChengBiotechnology Institute, School of Environment and Chemical Engineering, Dalian Jiaotong University , Dalian , China.
Zhi Qiang QinBiotechnology Institute, School of Environment and Chemical Engineering, Dalian Jiaotong University , Dalian , China.
Guang Bo GeDalian Institute of Chemical Physics, Chinese Academy of Sciences , Dalian , China.
Bai Lin AnBiotechnology Institute, School of Environment and Chemical Engineering, Dalian Jiaotong University , Dalian , China.
Pei Gen XiaoInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences , Beijing , China.
Dalian Jiaotong University · CNChinese Academy of Sciences · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We isolated three laccase-producing fungus strains from Taxus rhizosphere. Myrotheium verrucaria strain DJTU-sh7 had the highest laccase activity of 216.2 U/ml, which was increased to above 300 U/ml after optimization. DJTU-sh7 had the best decolorizing effect for three classes of reactive dyes. The DJTU-sh7-containing fungal consortium displayed the robust decolorizing ability. Both color removal efficiency and chemical oxygen demand were increased in the consortium mediated biotransformation. Transcriptome changes of M. verrucaria elicited by azo dye and phenolic were quantified by the high throughput transcriptome sequencing, and the activities of the selected oxidases and reductases were determined. The possible involvement of oxidases and reductases, especially laccase, aryl alcohol oxidase, and ferric reductase in the biotransformation of dye and phenolic compounds was revealed at both transcriptomic and phenotypic levels. Revealing the transcriptomic mechanisms of fungi in dealing with organic pollutants facilitates the fine-tuned manipulation of strains in developing novel bioremediation and biodegradation strategies. We isolated three laccase-producing fungus strains from

Indexed as

RhizosphereTranscriptomeAscomycotaAzo CompoundsBiodegradation, EnvironmentalBiotransformationColoring AgentsHigh-Throughput Nucleotide SequencingLaccasePhenolsPhenotypeSoil MicrobiologyTaxusAzo CompoundsColoring AgentsLaccasePhenolsdegradation mechanismlaccaseMyrotheciumreactive dye decolorizationtranscriptome sequencing

Identifiers

PMID30550228
PMCPMC7256826
OpenAlexW2904692271

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.