ArticlePlant biotechnology journal2019
Discovery of genomic regions and candidate genes controlling shelling percentage using QTL-seq approach in cultivated peanut (Arachis hypogaea L.).
Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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43 citing papers in PubMed, 88 citations in OpenAlex.
- Identification and validation of QTLs associated with resistance to tomato leaf curl Bangalore virus disease using QTL-seq analysis in tomato (Solanum spp.).Molecular biology reports · 2025Article
- Identification of AhFPA1 as the causal gene underlying qEFT13.1, a key QTL for early flowering in peanut.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Article
- Genetic analysis and identification of the candidate genes of maize resistance to Ustilago maydis by BSA-Seq and RNA-Seq.BMC plant biology · 2025Article
- A glycogen synthase kinase-3 gene enhances grain yield heterosis in semi-dwarf rapeseed.Plant molecular biology · 2025Article
- Dissecting genomic regions and underlying candidate genes in groundnut MAGIC population for drought tolerance.BMC plant biology · 2024Article
- Identification of a Major QTL for Seed Protein Content in Cultivated Peanut (Plants (Basel, Switzerland) · 2024Article
- Identification and application of a candidate gene AhAftr1 for aflatoxin production resistance in peanut seed (Arachis hypogaea L.).Journal of advanced research · 2024Article
- Designing future peanut: the power of genomics-assisted breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- A genomic variation map provides insights into peanut diversity in China and associations with 28 agronomic traits.Nature genetics · 2024Article
- Article
- Genetic mapping identified major main-effect and three co-localized quantitative trait loci controlling high iron and zinc content in groundnut.The plant genome · 2023Article
- Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut.The plant genome · 2023Article
- Fine mapping of qAHPS07 and functional studies of AhRUVBL2 controlling pod size in peanut (Arachis hypogaea L.).Plant biotechnology journal · 2023Article
- Identification of quantitative trait loci and development of diagnostic markers for growth habit traits in peanut (Arachis hypogaea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Genetic analysis and exploration of major effect QTLs underlying oil content in peanut.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Functional Bph14 from Rathu Heenati promotes resistance to BPH at the early seedling stage of rice (Oryza sativa L.) as revealed by QTL-seq.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Green revolution to genome revolution: driving better resilient crops against environmental instability.Frontiers in genetics · 2023Review
- Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut.Frontiers in genetics · 2023Article
- GWAS and bulked segregant analysis reveal the Loci controlling growth habit-related traits in cultivated Peanut (Arachis hypogaea L.).BMC genomics · 2022Article
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Authors and funding
15 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cultivated peanut (Arachis hypogaea L.) is an important grain legume providing high-quality cooking oil, rich proteins and other nutrients. Shelling percentage (SP) is the 2nd most important agronomic trait after pod yield and this trait significantly affects the economic value of peanut in the market. Deployment of diagnostic markers through genomics-assisted breeding (GAB) can accelerate the process of developing improved varieties with enhanced SP. In this context, we deployed the QTL-seq approach to identify genomic regions and candidate genes controlling SP in a recombinant inbred line population (Yuanza 9102 × Xuzhou 68-4). Four libraries (two parents and two extreme bulks) were constructed and sequenced, generating 456.89-790.32 million reads and achieving 91.85%-93.18% genome coverage and 14.04-21.37 mean read depth. Comprehensive analysis of two sets of data (Yuanza 9102/two bulks and Xuzhou 68-4/two bulks) using the QTL-seq pipeline resulted in discovery of two overlapped genomic regions (2.75 Mb on A09 and 1.1 Mb on B02). Nine candidate genes affected by 10 SNPs with non-synonymous effects or in UTRs were identified in these regions for SP. Cost-effective KASP (Kompetitive Allele-Specific PCR) markers were developed for one SNP from A09 and three SNPs from B02 chromosome. Genotyping of the mapping population with these newly developed KASP markers confirmed the major control and stable expressions of these genomic regions across five environments. The identified candidate genomic regions and genes for SP further provide opportunity for gene cloning and deployment of diagnostic markers in molecular breeding for achieving high SP in improved varieties.
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