Evidence map›Paper›PMID 30548429›Full record

ArticleMolecular genetics & genomic medicine2019

Identification of ANLN as a new likely pathogenic gene of branchio-otic syndrome in a three-generation Chinese family.

Lisha Deng, Yuanzhen Liu, Wenjun Xia, Jiongjiong Hu, Zhaoxin Ma

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Genetic research progress in branchioZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2022
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lisha DengDepartment of Otorhinolaryngology, Shanghai East Hospital, Tongji University, Shanghai, China.ORCID 0000-0001-6783-5131
Yuanzhen LiuDepartment of Otorhinolaryngology, Shanghai East Hospital (Ji'an campus), Ji'an, China.ORCID 0000-0003-4051-9037
Wenjun XiaInstitutes of Biomedical Science, Fudan University, Shanghai, China.ORCID 0000-0001-7723-636X
Jiongjiong HuDepartment of Otorhinolaryngology, Shanghai East Hospital, Tongji University, Shanghai, China.ORCID 0000-0003-0430-6798
Zhaoxin MaDepartment of Otorhinolaryngology, Shanghai East Hospital, Tongji University, Shanghai, China.ORCID 0000-0001-6867-6056
Shanghai East Hospital · CNFudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBranchio-oto-renal (BOR) syndrome is one of the most common autosomal dominant hearing loss syndromes and features clinical and genetic heterogeneity. When there is no renal deformity, this disease can also be called branchio-otic (BO) syndrome. Though many genes have been reported, there are still many BO syndrome-related genes to be identified. To identify a hitherto unknown candidate gene causing BO syndrome in a three-generation Chinese family, clinical, genetic, and functional analyses were employed.

methodsWhole-exome sequencing (WES) was conducted in three affected family members and two unaffected family members. PCR-Sanger sequencing was performed in all of the family members for segregation analysis and verification of the candidate variants. PCR-Sanger sequencing was also employed in 150 healthy people to examine the variants. In silico analysis was used to predict possible changes in the protein structure that may affect the phenotype.

resultsWe identified a heterozygous missense variant in ANLN: NM_018685.4: c.G1105A; NP_061155.2: p.G369R that segregated in the pedigree with an autosomal dominant pattern. No variant was found in the 150 controls and normal family members at this site. The variant c.G1105A was located in a highly conserved F-actin binding site. The amino acid residue at position 369 in the ANLN protein was highly conserved across different species.

conclusionIn this study, we identified, for the first time, a heterozygous missense variant in ANLN (NM_018685.4: c.G1105A; NP_061155.2: p.G369R) that is likely to be a candidate causative gene of BO syndrome in a specific Chinese family.

Indexed as

Mutation, MissenseAdultBranchio-Oto-Renal SyndromeChildFemaleHeterozygoteHumansMaleMicrofilament ProteinsMiddle AgedPedigreeANLN protein, humanMicrofilament ProteinsANLNautosomal dominantbranchio-otic syndromeexome sequencing

Identifiers

PMID30548429
PMCPMC6393648
OpenAlexW2904657697

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.