Evidence map›Paper›PMID 30548067›Full record

ArticleBiochemistry2019

Molecular Architecture of the Inositol Phosphatase Siw14.

Tyler J Florio, Ravi K Lokareddy, Richard E Gillilan, Gino Cingolani

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Tyler J FlorioDepartment of Biochemistry and Molecular Biology , Thomas Jefferson University , 233 South 10th Street , Philadelphia , Pennsylvania 19107 , United States.
Ravi K LokareddyDepartment of Biochemistry and Molecular Biology , Thomas Jefferson University , 233 South 10th Street , Philadelphia , Pennsylvania 19107 , United States.
Richard E GillilanMacromolecular Diffraction Facility, Cornell High Energy Synchrotron Source (MacCHESS) , Cornell University , 161 Synchrotron Drive , Ithaca , New York 14853 , United States.
Gino CingolaniDepartment of Biochemistry and Molecular Biology , Thomas Jefferson University , 233 South 10th Street , Philadelphia , Pennsylvania 19107 , United States.ORCID 0000-0002-9206-9640
Thomas Jefferson University · USCornell University · US

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI Andrew Chapman · 1995 to 2026
$94.8M
Suppressing glycogen storage with small molecule inhibitors as a therapeutic approach to Lafora DiseaseP01NS097197 · NINDS · UNIVERSITY OF KENTUCKY · PI GAO, TIANYAN · 2016 to 2021
$9.0M
Multisubunit viral ATPases that couple ATP-hydrolysis to genome translocationR01GM100888 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2012 to 2020
$2.5M
Regulation of Nuclear Import Through Importin Alpha IsoformsR01GM122844 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2018 to 2021
$1.4M
A NEW HYBRID DIFFRACTOMETER FOR MACROMOLECULAR CRYSTALLOGRAPHY AND SAXS AT TJUS10OD017987 · OD · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2014 to 2014
$600k
NCI NIH HHS P30 CA056036NIGMS NIH HHS R01 GM100888NIGMS NIH HHS R01 GM122844NIH HHS S10 OD017987NINDS NIH HHS P01 NS097197
6 · The paper itself

Abstract

Siw14 is a recently discovered inositol phosphatase implicated in suppressing prion propagation in Saccharomyces cerevisiae. In this paper, we used hybrid structural methods to decipher Siw14 molecular architecture. We found the protein exists in solution as an elongated monomer that is ∼140 Å in length, containing an acidic N-terminal domain and a basic C-terminal dual-specificity phosphatase (DSP) domain, structurally similar to the glycogen phosphatase laforin. The two domains are connected by a protease susceptible linker and do not interact in vitro. The crystal structure of Siw14-DSP reveals a highly basic phosphate-binding loop and an ∼10 Å deep substrate-binding crevice that evolved to dephosphorylate pyro-phosphate moieties. A pseudoatomic model of the full-length phosphatase generated from solution, crystallographic, biochemical, and modeling data sheds light on the interesting zwitterionic nature of Siw14, which we hypothesized may play a role in discriminating negatively charged inositol phosphates.

Indexed as

Protein ConformationAmino Acid SequenceCatalytic DomainCrystallography, X-RayProtein FoldingProtein Tyrosine PhosphatasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsProtein Tyrosine PhosphatasesSaccharomyces cerevisiae ProteinsSiw14 protein, S cerevisiae

Identifiers

PMID30548067
PMCPMC6526948
OpenAlexW2904829932

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.