Evidence map›Paper›PMID 30547079›Full record

ArticleChemistrySelect2016

Conformational Shift of a β-Hairpin Peptide upon Complex Formation with an Oligo-proline Peptide Studied by Mass Spectrometry.

Knut Kölbel, Stephan Warnke, Jongcheol Seo, Gert von Helden, Rocco Moretti, Jens Meiler, Kevin Pagel, Andrea Sinz

Abstract read
In one paragraph

Article in ChemistrySelect, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Knut KölbelDepartment of Pharmaceutical Chemistry and Bioanalytics, Institute for Pharmacy, Martin-Luther-Universit t Halle-Wittenberg W.-Langenbeck-Straße 4, 06120 Halle (Germany).
Stephan WarnkeFritz Haber Institute of the Max Planck Society, Faradayweg 4-614195 Berlin (Germany).
Jongcheol SeoFritz Haber Institute of the Max Planck Society, Faradayweg 4-614195 Berlin (Germany).
Gert von HeldenFritz Haber Institute of the Max Planck Society, Faradayweg 4-614195 Berlin (Germany).
Rocco MorettiDepartment of Chemistry and the Center for Structural Biology Vanderbilt University 465 21Ave South BIOSCi/MRBIII Nashville TN (USA).
Jens MeilerDepartment of Chemistry and the Center for Structural Biology Vanderbilt University 465 21Ave South BIOSCi/MRBIII Nashville TN (USA).
Kevin PagelFritz Haber Institute of the Max Planck Society, Faradayweg 4-614195 Berlin (Germany).
Andrea SinzDepartment of Pharmaceutical Chemistry and Bioanalytics, Institute for Pharmacy, Martin-Luther-Universit t Halle-Wittenberg W.-Langenbeck-Straße 4, 06120 Halle (Germany).

Funding

Membrane Protein Structure Elucidation from sparse NMR data (KAMP)R01GM080403 · NIGMS · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2007 to 2019
$3.0M
NIGMS NIH HHS R01 GM080403
6 · The paper itself

Abstract

So-called super-secondary structures such as the β-hairpin, studied here, form an intermediate hierarchy between secondary and tertiary structures of proteins. Their sequence-derived 'pure' peptide backbone conformation is combined with 'remote' interstrand or interresidue contacts reminiscent of the 3D-structure of full-length proteins. This renders them ideally suited for studying potential nucleation sites of protein folding reactions as well as intermolecular interactions. But β-hairpins do not merely serve as model systems; their unique structure characteristics warrant a central role in structural studies on their own. In this study we applied photo cross-linking in combination with high-resolution mass spectrometry and computational modeling as well as with ion mobility-mass spectrometry to elucidate these structural properties. Using variants of a known β-hairpin representative, the so-called trpzip peptide and its ligands, we found evidence for a conformational transition of the β-hairpin and its impact on ligand binding.

Indexed as

cross-linkingion mobilitymass spectrometrypeptide secondary structureRosetta modelling workflow

Identifiers

PMID30547079
PMCPMC6289508

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.