Evidence map›Paper›PMID 30545855›Full record

ArticleScience (New York, N.Y.)2018

Spatiotemporal transcriptomic divergence across human and macaque brain development.

Ying Zhu, André M M Sousa, Tianliuyun Gao, Mario Skarica, Mingfeng Li, Gabriel Santpere, Paula Esteller-Cucala, David Juan, Luis Ferrández-Peral, Forrest O Gulden and 6 more

Open access · greenAbstract readDataset
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 261 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
261citing papers in PubMed, 2 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

261 citing papers in PubMed, 2 syntheses or guidelines pooled it, 430 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Phosphoproteomic dysregulation promotes tumor proliferation in Cushing's disease.Proceedings of the National Academy of Sciences of the United States of America · 2026
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201 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Ying ZhuDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.
André M M SousaDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-1740-5066
Tianliuyun GaoDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-6261-8303
Mario SkaricaDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-2478-014X
Mingfeng LiDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7959-6008
Gabriel SantpereDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5909-8637
Paula Esteller-CucalaInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.ORCID http://orcid.org/0000-0003-3048-4280
David JuanInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.ORCID http://orcid.org/0000-0003-1912-9667
Luis Ferrández-PeralInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.ORCID http://orcid.org/0000-0003-0338-0603
Forrest O GuldenDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-3523-0247
Mo YangDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-1670-5243
Daniel J MillerDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-4844-0828
Tomas Marques-BonetInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.ORCID http://orcid.org/0000-0002-5597-3075
Yuka Imamura KawasawaDepartments of Pharmacology and Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State University College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0002-8638-6738
Hongyu ZhaoDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, USA.
Nenad SestanDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA. nenad.sestan@yale.edu.ORCID http://orcid.org/0000-0003-0966-9619
Institut de Biologia Evolutiva · ESYale University · USInstitució Catalana de Recerca i Estudis Avançats · ESPennsylvania State University · US

Funding

Functional Genomics of Human Brain DevelopmentP50MH106934 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2014 to 2019
$7.9M
Cis-Regulatory Epigenome Mappings in SchizophreniaU01MH103392 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, SKLAR, PAMELA · 2014 to 2017
$7.6M
Molecular Profiling of SchizophreniaR01MH110921 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHESS, ANDREW J, ROUSSOS, PANAGIOTIS · 2016 to 2020
$6.9M
Transcriptional and Epigenetic Signatures of Human Brain Development and AutismU01MH103339 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD, STATE, MATTHEW W. · 2014 to 2017
$6.5M
Risk genetic variants and cis regulation of gene expression in Bipolar DisorderR01MH109677 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ROUSSOS, PANAGIOTIS · 2016 to 2020
$4.6M
Genetic variants affect brain gene expression and risks of psychiatric disordersU01MH103340 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU, RZHETSKY, ANDREY · 2014 to 2017
$4.3M
Yale Macaque Brain ResourceR01MH113257 · NIMH · YALE UNIVERSITY · PI Alvaro Duque · 2017 to 2026
$4.3M
Integrative Genomics of the Corticolimbic Circuit in Major Depressive DisorderR01MH111721 · NIMH · JOHNS HOPKINS UNIVERSITY · PI GOES, FERNANDO SAMPAIO, HYDE, THOMAS MICHAEL · 2017 to 2021
$4.2M
2/2 Somatic mosaicism and autism spectrum disorderU01MH106874 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2015 to 2019
$4.0M
Mapping the role of long noncoding RNAs in gene regulatory networks in schizophreniaR01MH109715 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PINTO, DALILA · 2018 to 2022
$4.0M
1/3 Integrative Genomic Analysis of Human Brain Development and AutismR01MH110926 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2016 to 2019
$3.2M
RNA Sequencing of the Limbic System in Bipolar DisorderR01MH105898 · NIMH · JOHNS HOPKINS UNIVERSITY · PI HYDE, THOMAS MICHAEL, ZANDI, PETER P. · 2015 to 2018
$3.1M
BLRD VA I01 BX002876Howard Hughes Medical InstituteNIH HHS S10 OD018521NIH HHS S10 OD030363NIMH NIH HHS P50 MH106934NIMH NIH HHS R01 MH094714NIMH NIH HHS R01 MH105898NIMH NIH HHS R01 MH109677NIMH NIH HHS R01 MH109715NIMH NIH HHS R01 MH109904NIMH NIH HHS R01 MH110905NIMH NIH HHS R01 MH110920NIMH NIH HHS R01 MH110921NIMH NIH HHS R01 MH110926NIMH NIH HHS R01 MH110927NIMH NIH HHS R01 MH110928NIMH NIH HHS R01 MH111721NIMH NIH HHS R01 MH113257NIMH NIH HHS R21 MH102791NIMH NIH HHS R21 MH103877NIMH NIH HHS R21 MH105853NIMH NIH HHS R21 MH105881NIMH NIH HHS R21 MH109956NIMH NIH HHS U01 MH103339NIMH NIH HHS U01 MH103340NIMH NIH HHS U01 MH103346NIMH NIH HHS U01 MH103365NIMH NIH HHS U01 MH103392NIMH NIH HHS U01 MH106874
6 · The paper itself

Abstract

Human nervous system development is an intricate and protracted process that requires precise spatiotemporal transcriptional regulation. We generated tissue-level and single-cell transcriptomic data from up to 16 brain regions covering prenatal and postnatal rhesus macaque development. Integrative analysis with complementary human data revealed that global intraspecies (ontogenetic) and interspecies (phylogenetic) regional transcriptomic differences exhibit concerted cup-shaped patterns, with a late fetal-to-infancy (perinatal) convergence. Prenatal neocortical transcriptomic patterns revealed transient topographic gradients, whereas postnatal patterns largely reflected functional hierarchy. Genes exhibiting heterotopic and heterochronic divergence included those transiently enriched in the prenatal prefrontal cortex or linked to autism spectrum disorder and schizophrenia. Our findings shed light on transcriptomic programs underlying the evolution of human brain development and the pathogenesis of neuropsychiatric disorders.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAutism Spectrum DisorderBrainHumansMacaca mulattaNeurogenesisPrefrontal CortexSchizophreniaTranscriptome

Identifiers

PMID30545855
PMCPMC6900982
OpenAlexW2903689387

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.