Evidence map›Paper›PMID 30545851›Full record

ArticleScience (New York, N.Y.)2018

Neuron-specific signatures in the chromosomal connectome associated with schizophrenia risk.

Prashanth Rajarajan, Tyler Borrman, Will Liao, Nadine Schrode, Erin Flaherty, Charlize Casiño, Samuel Powell, Chittampalli Yashaswini, Elizabeth A LaMarca, Bibi Kassim and 14 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed, 1 pooled it
20.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 1 synthesis or guideline pooled it, 228 citations in OpenAlex.

  1. Pooled it
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74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 1 country.

Prashanth RajarajanIcahn School of Medicine M.D./Ph.D. Program, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0002-1240-6716
Tyler BorrmanProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.ORCID http://orcid.org/0000-0001-7386-8159
Will LiaoNew York Genome Center, New York, NY 10013, USA.ORCID http://orcid.org/0000-0001-7574-4694
Nadine SchrodeDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0001-5315-6816
Erin FlahertyIcahn School of Medicine M.D./Ph.D. Program, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0003-1109-3313
Charlize CasiñoDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.
Samuel PowellIcahn School of Medicine M.D./Ph.D. Program, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0001-7002-2756
Chittampalli YashaswiniIcahn School of Medicine M.D./Ph.D. Program, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0002-0200-6161
Elizabeth A LaMarcaIcahn School of Medicine M.D./Ph.D. Program, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0002-9514-2233
Bibi KassimDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.
Behnam JavidfarDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.
Sergio Espeso-GilDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0001-9145-3870
Aiqun LiDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0003-1485-5352
Hyejung WonNeurogenetics Program, Department of Neurology, Center for Autism Research and Treatment, Semel Institute, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.ORCID http://orcid.org/0000-0003-3651-0566
Daniel H GeschwindNeurogenetics Program, Department of Neurology, Center for Autism Research and Treatment, Semel Institute, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.ORCID http://orcid.org/0000-0003-2896-3450
Seok-Man HoIcahn School of Medicine M.D./Ph.D. Program, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0002-6382-5080
Matthew MacDonaldNeuropsychiatric Signaling Program, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Gabriel E HoffmanDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0002-0957-0224
Panos RoussosDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.ORCID http://orcid.org/0000-0002-4640-6239
Bin ZhangDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.
Chang-Gyu HahnNeuropsychiatric Signaling Program, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Zhiping WengProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.ORCID http://orcid.org/0000-0002-3032-7966
Kristen J BrennandDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA.
Schahram AkbarianDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10027, USA. schahram.akbarian@mssm.edu.ORCID http://orcid.org/0000-0001-7700-0891
Allen Institute for Brain Science · USIcahn School of Medicine at Mount Sinai · USUniversity of California, Los Angeles · USUniversity of Massachusetts Chan Medical School · USUniversity of Pennsylvania · USNew York Genome Center · US

Funding

MOUNT SINAI MEDICAL SCIENTIST TRAINING PROGRAMT32GM007280 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI BARON, MARGARET H · 1985 to 2021
$22.8M
Cis-Regulatory Epigenome Mappings in SchizophreniaU01MH103392 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, SKLAR, PAMELA · 2014 to 2017
$7.6M
Higher Order Chromatin and Genetic Risk for SchizophreniaR01MH106056 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, BRENNAND, KRISTEN JENNIFER · 2015 to 2023
$6.7M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Connecting gene regulatory mechanisms in human brain to psychiatric illnessR00MH113823 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WON, HYEJUNG · 2018 to 2020
$719k
3D Genome Mapping in the Human Brain and its Implications for SchizophreniaF30MH113330 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI RAJARAJAN, PRASHANTH · 2017 to 2020
$188k
NIGMS NIH HHS T32 GM007280NIH HHS S10 OD018522NIMH NIH HHS F30 MH113330NIMH NIH HHS R00 MH113823NIMH NIH HHS R01 MH106056NIMH NIH HHS U01 MH103392
6 · The paper itself

Abstract

To explore the developmental reorganization of the three-dimensional genome of the brain in the context of neuropsychiatric disease, we monitored chromosomal conformations in differentiating neural progenitor cells. Neuronal and glial differentiation was associated with widespread developmental remodeling of the chromosomal contact map and included interactions anchored in common variant sequences that confer heritable risk for schizophrenia. We describe cell type-specific chromosomal connectomes composed of schizophrenia risk variants and their distal targets, which altogether show enrichment for genes that regulate neuronal connectivity and chromatin remodeling, and evidence for coordinated transcriptional regulation and proteomic interaction of the participating genes. Developmentally regulated chromosomal conformation changes at schizophrenia-relevant sequences disproportionally occurred in neurons, highlighting the existence of cell type-specific disease risk vulnerabilities in spatial genome organization.

Indexed as

ConnectomeEpigenesis, GeneticGene Expression Regulation, DevelopmentalGenetic Predisposition to DiseaseBrainCells, CulturedChromatinChromatin Assembly and DisassemblyChromosomes, HumanGenome, HumanGenome-Wide Association StudyHumansMaleNeural Stem CellsNeurogenesisNeurogliaChromatin

Identifiers

PMID30545851
PMCPMC6408958
OpenAlexW2904628228

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.