Evidence map›Paper›PMID 30545299›Full record

ArticleBMC genomics2018

Transcriptome profile in bursa of Fabricius reveals potential mode for stress-influenced immune function in chicken stress model.

Yanhua Zhang, Yanting Zhou, Guirong Sun, Kui Li, Zhuanjian Li, Aru Su, Xiaojun Liu, Guoxi Li, Ruirui Jiang, Ruili Han and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

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  14. Frontiers in veterinary science · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Yanhua ZhangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Yanting ZhouCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Guirong SunCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Kui LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Zhuanjian LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Aru SuCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Xiaojun LiuCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Guoxi LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Ruirui JiangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Ruili HanCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Yadong TianCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Xiangtao KangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China.
Fengbin YanCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China. yanfb790811@sina.com.
Henan Agricultural University · CN

Funding

Key scientific research project plan of Henan Province colleges and universities 14A230018Key scientific research project plan of Henan Province colleges and universities 17A230015Natural Science Foundation of Henan Province 162300410141Program for Innovation Research Team of Ministry of Education IRT16R23Science and Technology Planning Project of Henan Province 162300410172
6 · The paper itself

Abstract

backgroundThe molecular mechanisms underlying stress-influenced immune function of chicken (Gallus Gallus) are not clear. The stress models can be established effectively by feeding chickens corticosterone (CORT) hormone. The bursa of Fabricius is a unique central immune organ of birds. RNA-Seq technology was used to investigate differences in the expression profiles of immune-related genes and associated pathways in the bursa of Fabricius to clarify molecular mechanisms. The aim of this study was to broaden the understanding of the stress-influenced immune function in chickens.

resultsDifferentially expressed genes (DEGs) in the bursa of Fabricius between experimental group (basal diet with added CORT 30 mg/kg; C_B group) and control group (basal diet; B_B group) were identified by using RNA-seq technology. In total, we found 1434 significant DEGs (SDEGs), which included 199 upregulated and 1235 downregulated genes in the C_B group compared with the B_B group. The immune system process GO term was the top significantly GO term, including MYD88, TLR4, IL15, VEGFA gene and so on. The cytokine-cytokine receptor interaction pathway and the Toll-like receptor signaling pathway were the key pathways affected by stress. The protein-protein interaction (PPI) analysis of the SDEGs showed that VEGFA, MyD88 and IL15 were hub genes and module analysis showed that MYD88, TLR4 and VEGFA play important roles in response to stress.

conclusionThis study showed that the VEGFA and ILs (such as IL15) via the cytokine-cytokine receptor interaction pathway, MYD88 and TLR4 via the Toll-like receptor signaling pathway may play important roles in the regulation of immune function under stress condition with CORT administration. The results of this study provide a reference for further studies of the molecular mechanisms of stress-influenced immune function.

Indexed as

AnimalsBursa of FabriciusChickensCluster AnalysisCorticosteroneDietImmunityInterleukin-15Models, AnimalProtein Interaction MapsRNASequence Analysis, RNASignal TransductionToll-Like Receptor 4TranscriptomeVascular Endothelial Growth Factor ACorticosteroneInterleukin-15RNAToll-Like Receptor 4Vascular Endothelial Growth Factor ABursa of FabriciusChickenCorticosterone hormoneImmune functionStress

Identifiers

PMID30545299
PMCPMC6293626
OpenAlexW2904964756

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.