Evidence map›Paper›PMID 30543507›Full record

ArticleMicrobiology (Reading, England)2019

Gene ssfg_01967 (miaB) for tRNA modification influences morphogenesis and moenomycin biosynthesis in Streptomyces ghanaensis ATCC14672.

Yuliia Sehin, Oksana Koshla, Yuriy Dacyuk, Ruoxia Zhao, Robert Ross, Maksym Myronovskyi, Patrick A Limbach, Andriy Luzhetskyy, Suzanne Walker, Victor Fedorenko and 1 more

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Yuliia Sehin1​Department of Genetics and Biotechnology, Ivan Franko National University of Lviv, Hrushevskoho st. 4, Lviv 79005, Ukraine.
Oksana Koshla1​Department of Genetics and Biotechnology, Ivan Franko National University of Lviv, Hrushevskoho st. 4, Lviv 79005, Ukraine.
Yuriy Dacyuk2​Department of Physics of the Earth, Ivan Franko National University of Lviv, Hrushevskoho st. 4, Lviv 79005, Ukraine.
Ruoxia Zhao3​Rieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, 318 College Dr, 404 Crosley Tower, Cincinnati OH 45221-0172, USA.
Robert Ross3​Rieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, 318 College Dr, 404 Crosley Tower, Cincinnati OH 45221-0172, USA.
Maksym Myronovskyi4​Helmholtz Institute for Pharmaceutical Research Saarland Campus, Building C2.3, 66123 Saarbrucken, Germany.
Patrick A Limbach3​Rieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, 318 College Dr, 404 Crosley Tower, Cincinnati OH 45221-0172, USA.
Andriy Luzhetskyy4​Helmholtz Institute for Pharmaceutical Research Saarland Campus, Building C2.3, 66123 Saarbrucken, Germany.
Suzanne Walker5​Department of Microbiology and Immunobiology, Harvard Medical School, 4 Blackfan Circle, Boston, MA 02115, USA.
Victor Fedorenko1​Department of Genetics and Biotechnology, Ivan Franko National University of Lviv, Hrushevskoho st. 4, Lviv 79005, Ukraine.
Bohdan Ostash1​Department of Genetics and Biotechnology, Ivan Franko National University of Lviv, Hrushevskoho st. 4, Lviv 79005, Ukraine.
Lviv University · UAUniversity of Cincinnati · USHelmholtz Institute for Pharmaceutical Research Saarland · DEHarvard University · US

Funding

UPLC for Enhanced Mass Spectrometry of Modified RNAsR01GM058843 · NIGMS · UNIVERSITY OF CINCINNATI · PI LIMBACH, PATRICK A · 1999 to 2025
$5.1M
Enabling Biotechnologies to Generate Novel Phosphoglycolipid AntibioticsR03TW009424 · FIC · HARVARD MEDICAL SCHOOL · PI WALKER, SUZANNE · 2013 to 2015
$135k
Albany 2009: The 16th ConversationR13GM088843 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI SARMA, RAMASWAMY H · 2009 to 2009
$5k
FIC NIH HHS R03 TW009424NIGMS NIH HHS R01 GM058843NIGMS NIH HHS R13 GM088843
6 · The paper itself

Abstract

Streptomyces ghanaensis ATCC14672 is remarkable for its production of phosphoglycolipid compounds, moenomycins, which serve as a blueprint for the development of a novel class of antibiotics based on inhibition of peptidoglycan glycosyltransferases. Here we employed mariner transposon (Tn) mutagenesis to find new regulatory genes essential for moenomycin production. We generated a library of 3000 mutants which were screened for altered antibiotic activity. Our focus centred on a single mutant, HIM5, which accumulated lower amounts of moenomycin and was impaired in morphogenesis as compared to the parental strain. HIM5 carried the Tn insertion within gene ssfg_01967 for putative tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase, or MiaB, and led to a reduced level of thiomethylation at position 37 in the anticodon of S. ghanaensis transfer ribonucleic acid (tRNA). It is likely that the mutant phenotype of HIM5 stems from the way in which ssfg_01967::Tn influences translation of the rare leucine codon UUA in several genes for moenomycin production and life cycle progression in S. ghanaensis. This is the first report showing that quantitative changes in tRNA modification status in Streptomyces have physiological consequences.

Indexed as

Genes, BacterialAnti-Bacterial AgentsBacterial ProteinsIsopentenyladenosineMutagenesis, InsertionalOligosaccharidesProtein BiosynthesisProtein Processing, Post-TranslationalRNA, TransferSpores, BacterialStreptomycesSulfurtransferases2-methylthio-N-6-isopentenyladenosineAnti-Bacterial AgentsBacterial ProteinsIsopentenyladenosinemoenomycinOligosaccharidesRNA, TransferSulfurtransferasesMiaBmoenomycinmorphogenesisstreptomycestRNA modification

Identifiers

PMID30543507
PMCPMC7003650
OpenAlexW2904771989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.