Evidence map›Paper›PMID 30542569›Full record

ArticleChemical science2018

Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals.

Kengo Ito, Yuka Obuchi, Eisuke Chikayama, Yasuhiro Date, Jun Kikuchi

Abstract read
In one paragraph

Article in Chemical science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Real-time prediction ofChemical science · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. NMR-TS: de novo molecule identification from NMR spectra.Science and technology of advanced materials · 2020
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kengo ItoRIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi-ku , Yokohama , Kanagawa 230-0045 , Japan . Email: jun.kikuchi@riken.jp.ORCID 0000-0002-5700-688X
Yuka ObuchiGraduate School of Medical Life Science , Yokohama City University , 1-7-29 Suehiro-cho, Tsurumi-ku , Yokohama , Kanagawa 230-0045 , Japan.
Eisuke ChikayamaRIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi-ku , Yokohama , Kanagawa 230-0045 , Japan . Email: jun.kikuchi@riken.jp.
Yasuhiro DateRIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi-ku , Yokohama , Kanagawa 230-0045 , Japan . Email: jun.kikuchi@riken.jp.
Jun KikuchiRIKEN Center for Sustainable Resource Science , 1-7-22 Suehiro-cho, Tsurumi-ku , Yokohama , Kanagawa 230-0045 , Japan . Email: jun.kikuchi@riken.jp.ORCID 0000-0002-6809-394X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Various chemical shift predictive methodologies have been studied and developed, but there remains the problem of prediction accuracy. Assigning the NMR signals of metabolic mixtures requires high predictive performance owing to the complexity of the signals. Here we propose a new predictive tool that combines quantum chemistry and machine learning. A scaling factor as the objective variable to correct the errors of 2355 theoretical chemical shifts was optimized by exploring 91 machine learning algorithms and using the partial structure of 150 compounds as explanatory variables. The optimal predictive model gave RMSDs between experimental and predicted chemical shifts of 0.2177 ppm for

Identifiers

PMID30542569
PMCPMC6240814

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.