ArticleFrontiers in plant science2018
An Automated Image Analysis Pipeline Enables Genetic Studies of Shoot and Root Morphology in Carrot (
Article in Frontiers in plant science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 46 citations in OpenAlex.
- Advances in root phenotyping: high-throughput imaging, computational tools, and integrative approaches for crop improvement.Journal of experimental botany · 2026Review
- Article
- BerryPortraits: Phenotyping Of Ripening Traits cranberry (Vaccinium macrocarpon Ait.) with YOLOv8.Plant methods · 2024Article
- Linkage mapping of root shape traits in two carrot populations.G3 (Bethesda, Md.) · 2024Article
- Temporal phenotypic variation of spinach root traits and its relation to shoot performance.Scientific reports · 2024Article
- Evaluation of shoot-growth variation in diverse carrot (Frontiers in plant science · 2024Article
- Morphological characterizations of parsnip (Food science & nutrition · 2023Article
- Image-Based High-Throughput Phenotyping in Horticultural Crops.Plants (Basel, Switzerland) · 2023Review
- Form and contour: breeding and genetics of organ shape from wild relatives to modern vegetable crops.Frontiers in plant science · 2023Review
- A trait-environment relationship approach to participatory plant breeding for organic agriculture.The New phytologist · 2022Article
- Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Detection of Chromosomal Segments Introgressed from Wild Species of Carrot into Cultivars: Quantitative Trait Loci Mapping for Morphological Features in Backcross Inbred Lines.Plants (Basel, Switzerland) · 2022Article
- The influence of the Or and Carotene Hydroxylase genes on carotenoid accumulation in orange carrots [Daucus carota (L.)].TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Exploring genetic architecture for pod-related traits in soybean using image-based phenotyping.Molecular breeding : new strategies in plant improvement · 2021Article
- Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry.Plant phenomics (Washington, D.C.) · 2021Article
- A Digital Image-Based Phenotyping Platform for Analyzing Root Shape Attributes in Carrot.Frontiers in plant science · 2021Article
- Improvement of Phosphorus Use Efficiency in Rice by Adopting Image-Based Phenotyping and Tolerant Indices.Frontiers in plant science · 2021Article
- Mining for Candidate Genes Controlling Secondary Growth of the Carrot Storage Root.International journal of molecular sciences · 2020Article
- Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry.GigaScience · 2020Article
- Non-destructive phenotyping for early seedling vigor in direct-seeded rice.Plant methods · 2020Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Carrot is a globally important crop, yet efficient and accurate methods for quantifying its most important agronomic traits are lacking. To address this problem, we developed an automated image analysis platform that extracts components of size and shape for carrot shoots and roots, which are necessary to advance carrot breeding and genetics. This method reliably measured variation in shoot size and shape, petiole number, petiole length, and petiole width as evidenced by high correlations with hundreds of manual measurements. Similarly, root length and biomass were accurately measured from the images. This platform also quantified shoot and root shapes in terms of principal components, which do not have traditional, manually measurable equivalents. We applied the pipeline in a study of a six-parent diallel population and an F
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.