Evidence map›Paper›PMID 30541886›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Yeast require redox switching in DNA primase.

Elizabeth O'Brien, Lauren E Salay, Esther A Epum, Katherine L Friedman, Walter J Chazin, Jacqueline K Barton

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. UvrC Coordinates an OJournal of the American Chemical Society · 2020
    Article
  8. Review
  9. Substrate Binding Regulates Redox Signaling in Human DNA Primase.Journal of the American Chemical Society · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Elizabeth O'BrienDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125.
Lauren E SalayDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37235.
Esther A EpumDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.
Katherine L FriedmanDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.
Walter J ChazinDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37235; walter.j.chazin@vanderbilt.edu jkbarton@caltech.edu.
Jacqueline K BartonDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125; walter.j.chazin@vanderbilt.edu jkbarton@caltech.edu.ORCID 0000-0001-9883-1600
Vanderbilt University · USCalifornia Institute of Technology · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Structural Biology of Multi-Domain Proteins and Multi-Protein Machinery in DNA Replication and RepairR35GM118089 · NIGMS · VANDERBILT UNIVERSITY · PI WALTER J. CHAZIN · 2016 to 2026
$4.9M
DNA Sensing and SignalingR35GM126904 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BARTON, JACQUELINE K · 2018 to 2021
$2.4M
STRUCTURE AND DYNAMICS OF CA++-BINDING PROTEINS BY NMRR01GM040120 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J · 1993 to 2005
$1.5M
Hotspots of de novo telomere addition as mediators of genomic instability in yeastR01GM123292 · NIGMS · VANDERBILT UNIVERSITY · PI FRIEDMAN, KATHERINE LOUISE · 2017 to 2020
$1.3M
High-Performance Computer Cluster for Biomedical ResearchS10OD023680 · OD · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2017 to 2017
$587k
NIGMS NIH HHS R01 GM040120NIGMS NIH HHS R01 GM123292NIGMS NIH HHS R35 GM118089NIGMS NIH HHS R35 GM126904NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32 GM008320NIH HHS S10 OD023680
6 · The paper itself

Abstract

Eukaryotic DNA primases contain a [4Fe4S] cluster in the C-terminal domain of the p58 subunit (p58C) that affects substrate affinity but is not required for catalysis. We show that, in yeast primase, the cluster serves as a DNA-mediated redox switch governing DNA binding, just as in human primase. Despite a different structural arrangement of tyrosines to facilitate electron transfer between the DNA substrate and [4Fe4S] cluster, in yeast, mutation of tyrosines Y395 and Y397 alters the same electron transfer chemistry and redox switch. Mutation of conserved tyrosine 395 diminishes the extent of p58C participation in normal redox-switching reactions, whereas mutation of conserved tyrosine 397 causes oxidative cluster degradation to the [3Fe4S]

Indexed as

Crystallography, X-RayDNA PrimaseElectron TransportIron-Sulfur ProteinsModels, MolecularMutationOxidation-ReductionProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA PrimaseIron-Sulfur ProteinsSaccharomyces cerevisiae ProteinsDNA charge transportDNA replicationiron–sulfur proteins

Identifiers

PMID30541886
PMCPMC6310810
OpenAlexW2904418799

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.