Evidence map›Paper›PMID 30540950›Full record

ArticleCell reports2018

Ten-Eleven Translocation Proteins Modulate the Response to Environmental Stress in Mice.

Ying Cheng, Miao Sun, Li Chen, Yujing Li, Li Lin, Bing Yao, Ziyi Li, Zhiqin Wang, Jack Chen, Zhigang Miao and 6 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Targeting Nr2e3 to Modulate Tet2 Expression: Therapeutic Potential for Depression Treatment.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  11. Review
  12. Epigenetic modifications of DNA and RNA in Alzheimer's disease.Frontiers in molecular neuroscience · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Epigenetics in psychiatry: Beyond DNA methylation.World journal of psychiatry · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Ying ChengDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Miao SunThe Institute of Neuroscience, Soochow University, Suzhou City 215006, P.R. China; Institute for Fetology, the First Affiliated Hospital of Soochow University, Suzhou City 215006, P.R. China.
Li ChenDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Yujing LiDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Li LinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Bing YaoDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Ziyi LiDepartment of Biostatistics and Bioinformatics, Emory University Rollins School of Public Health, Atlanta, GA 30322, USA.
Zhiqin WangDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Jack ChenDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Zhigang MiaoThe Institute of Neuroscience, Soochow University, Suzhou City 215006, P.R. China.
Ning XinThe Institute of Neuroscience, Soochow University, Suzhou City 215006, P.R. China.
Luoxiu HuangDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Emily G AllenDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Hao WuDepartment of Biostatistics and Bioinformatics, Emory University Rollins School of Public Health, Atlanta, GA 30322, USA.
Xingshun XuThe Institute of Neuroscience, Soochow University, Suzhou City 215006, P.R. China. Electronic address: xingshunxu@suda.edu.cn.
Peng JinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA. Electronic address: peng.jin@emory.edu.
Emory University · USSoochow University · CNFirst Affiliated Hospital of Soochow University · CN

Funding

Molecular Basis of rCGG-Mediated NeurodegenerationR01NS051630 · NINDS · EMORY UNIVERSITY · PI NELSON, DAVID LOREN · 2006 to 2023
$9.8M
Translational models of neurodevelopmental epigenetics and disease using human iPSCsP01NS097206 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI HE, CHUAN · 2016 to 2020
$4.3M
Genome-wide Profiling of Brain DNA Hydroxymethylome in Alzheimer’s DiseaseRF1AG052476 · NIA · UNIVERSITY OF FLORIDA · PI BENNETT, DAVID ALAN, JIN, PENG · 2016 to 2019
$4.1M
Genome-wide mapping and integrative analysis of DNA 6mA methylome in human AD brainR01AG064786 · NIA · UNIVERSITY OF FLORIDA · PI BENNETT, DAVID ALAN, YAO, BING · 2019 to 2023
$3.3M
Tet-mediated Epigenetic Modulation in AutismR01MH102690 · NIMH · EMORY UNIVERSITY · PI JIN, PENG, WARREN, STEPHEN T. · 2014 to 2017
$2.6M
5-Hydroxymethylcytosine in NeurodevelopmentR01NS079625 · NINDS · EMORY UNIVERSITY · PI JIN, PENG · 2012 to 2016
$1.7M
NIA NIH HHS R01 AG064786NIA NIH HHS RF1 AG052476NIMH NIH HHS R01 MH102690NINDS NIH HHS P01 NS097206NINDS NIH HHS R01 NS051630NINDS NIH HHS R01 NS079625
6 · The paper itself

Abstract

5-hydroxymethylcytosine (5hmC) is enriched in brain and has been recognized as an important DNA modification. However, the roles of 5hmC and its writers, ten-eleven translocation (Tet) proteins, in stress-induced response have yet to be elucidated. Here, we show that chronic restraint stress (CRS) induced depression-like behavior in mice and resulted in a 5hmC reduction in prefrontal cortex (PFC). We found that loss of Tet1 (Tet1 KO) led to resistance to CRS, whereas loss of Tet2 (Tet2 KO) increased the susceptibility of mice to CRS. Genome-wide 5hmC profiling identified the phenotype-associated stress-induced dynamically hydroxymethylated loci (PA-SI-DhMLs), which are strongly enriched with hypoxia-induced factor (HIF) binding motifs. We demonstrated the physical interaction between TET1 and HIF1α induced by CRS and revealed that the increased HIF1α binding under CRS is associated with SI-DhMLs. These results suggest that TET1 could regulate stress-induced response by interacting with HIF1α.

Indexed as

EnvironmentStress, Physiological5-MethylcytosineAnimalsDioxygenasesDNA-Binding ProteinsDNA MethylationGene Expression RegulationHypoxia-Inducible Factor 1, alpha SubunitMaleMice, Inbred C57BLMice, KnockoutPhenotypePrefrontal CortexProtein BindingProto-Oncogene Proteins5-hydroxymethylcytosine5-MethylcytosineDioxygenasesDNA-Binding ProteinsHif1a protein, mouseHypoxia-Inducible Factor 1, alpha SubunitProto-Oncogene ProteinsTET1 protein, mouseTet2 protein, mouse5-hydroxymethylcytosinedepressionprefrontal cortexstressTet protein

Identifiers

PMID30540950
PMCPMC6350936
OpenAlexW2905013074

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.