Evidence map›Paper›PMID 30540823›Full record

ArticlePloS one2018

Mycobacterium africanum (Lineage 6) shows slower sputum smear conversion on tuberculosis treatment than Mycobacterium tuberculosis (Lineage 4) in Bamako, Mali.

Bassirou Diarra, Mahamadou Kone, Antieme Combo Georges Togo, Yeya Dit Sadio Sarro, Aissata Boubakar Cisse, Amadou Somboro, Boureima Degoga, Mohamed Tolofoudie, Bourahima Kone, Moumine Sanogo and 13 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Discrimination betweenOne health (Amsterdam, Netherlands) · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Sex Differences in Active Pulmonary Tuberculosis Outcomes in Mali, West Africa.The American journal of tropical medicine and hygiene · 2022
    Article
  8. Review
  9. Review
  10. Molecular epidemiology and genetic diversity of Mycobacterium tuberculosis complex in referral health centers of Bamako, Mali: What is new?International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2022
    Article
  11. Understanding the Genetic Diversity ofFrontiers in genetics · 2022
    Article
  12. Article
  13. Review
  14. Phylogenomics ofMicrobial genomics · 2021
    Article
  15. Association ofThe American journal of tropical medicine and hygiene · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 3 countries.

Bassirou DiarraUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.ORCID 0000-0002-1795-9379
Mahamadou KoneUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Antieme Combo Georges TogoUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Yeya Dit Sadio SarroUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Aissata Boubakar CisseLaboratoire National de Référence des Mycobactéries (LNR), Institut National de Recherche en Santé publique (INRSP), Bamako, Mali.
Amadou SomboroUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Boureima DegogaUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Mohamed TolofoudieUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Bourahima KoneUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Moumine SanogoUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Bocar BayaUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Ousmane KodioUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Mamoudou MaigaGlobal Health, Northwestern University, Chicago, IL, United States of America.
Michael BelsonCollaborative Clinical Research Branch, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, United States of America.
Susan OrsegaCollaborative Clinical Research Branch, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland, United States of America.
Meryam KritInstitute of Tropical Medicine, Department of Biomedical Sciences, Antwerp, Belgium.ORCID 0000-0002-2357-1389
Sounkalo DaoUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Ibrahim Izétiegouma MaigaLaboratoire d'analyses Médicales et Hygiène Hospitalière du Centre Hospitalier Universitaire du Point-G, Bamako, Mali.
Robert L MurphyGlobal Health, Northwestern University, Chicago, IL, United States of America.
Leen RigoutsInstitute of Tropical Medicine, Department of Biomedical Sciences, Antwerp, Belgium.
Seydou DoumbiaUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Souleymane DialloUniversity Clinical Research Center (UCRC)-SEREFO-Laboratory, University of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Bouke Catherine de JongInstitute of Tropical Medicine, Department of Biomedical Sciences, Antwerp, Belgium.
Université des Sciences, des Techniques et des Technologies de Bamako · MLInstituut voor Tropische Geneeskunde · BENational Institute of Allergy and Infectious Diseases · USNorthwestern University · USUniversity of Antwerp · BEInstitut National de Recherche en Santé Publique · MLUniversity of Bamako · ML

Funding

HIV and Mycobacterial Disease in MaliD43TW010350 · FIC · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI MAIGA, ALMOUSTAPHA ISSIAKA, MURPHY, ROBERT LEO · 2016 to 2025
$3.0M
Host-Pathogen Interactions in a Failing Global lineage of MTBC:M.africanumR01AI110386 · NIAID · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI DIALLO, SOULEYMANE · 2014 to 2018
$1.2M
Strengthening Guinea-Mali Collaborative Training and Research Network for a Better Control of Emerging Viral DiseasesD71TW010428 · FIC · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI BEAVOGUI, ABDOUL HABIB, DIARRA, BASSIROU · 2017 to 2017
$50k
FIC NIH HHS D43 TW010350FIC NIH HHS D71 TW010428NIAID NIH HHS R01 AI110386
6 · The paper itself

Abstract

objectiveAncestral M. tuberculosis complex lineages such as M. africanum are underrepresented among retreatment patients and those with drug resistance. To test the hypothesis that they respond faster to TB treatment, we determined the rate of smear conversion of new pulmonary tuberculosis patients in Bamako, Mali by the main MTBc lineages.

methodsBetween 2015 and 2017, we conducted a prospective cohort study of new smear positive pulmonary tuberculosis patients in Bamako. Confirmed MTBc isolates underwent genotyping by spoligotyping for lineage classification. Patients were followed at 1 month (M), 2M and 5M to measure smear conversion in auramine (AR) and Fluorescein DiAcetate (FDA) vital stain microscopy.

resultAll the first six human MTBc lineages were represented in the population, plus M. bovis in 0.8% of the patients. The most widely represented lineage was the modern Euro-American lineage (L) 4, 57%, predominantly the T family, followed by L6 (M. africanum type 2) in 22.9%. Ancestral lineages 1, 5, 6 and M. bovis combined amounted to 28.8%. Excluding 25 patients with rifampicin resistance, smear conversion, both by AR and FDA, occurred later in L6 compared to L4 (HR 0.80 (95% CI 0.66-0.97) for AR, and HR 0.81 (95%CI 0.68-0.97) for FDA). In addition we found that HIV negative status, higher BMI at day 0, and patients with smear grade at baseline ≤ 1+ were associated with earlier smear conversion.

conclusionThe six major human lineages of the MTBc all circulate in Bamako. Counter to our hypothesis, we found that patients diseased with modern M. tuberculosis complex L4 respond faster to TB treatment than those with M. africanum L6.

Indexed as

AdolescentAdultAntitubercular AgentsBacterial Typing TechniquesDrug Resistance, BacterialFemaleHumansMaleMaliMicroscopyMycobacteriumOdds RatioProspective StudiesRifampinSputumTuberculosisAntitubercular AgentsRifampin

Identifiers

PMID30540823
PMCPMC6291124
OpenAlexW2903856336

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.