Evidence map›Paper›PMID 30540750›Full record

ArticlePLoS genetics2018

Boundaries mediate long-distance interactions between enhancers and promoters in the Drosophila Bithorax complex.

Nikolay Postika, Mario Metzler, Markus Affolter, Martin Müller, Paul Schedl, Pavel Georgiev, Olga Kyrchanova

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Developmental patterning of adipose tissue bybioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. eLife · 2024
    Article
  4. Article
  5. Article
  6. Transcriptional Readthrough Interrupts Boundary Function in Drosophila.International journal of molecular sciences · 2023
    Article
  7. Boundary Bypass Activity in thebioRxiv : the preprint server for biology · 2023
    Article
  8. Transcriptional read through interrupts boundary function in Drosophila.bioRxiv : the preprint server for biology · 2023
    Article
  9. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Homeotic Genes: Clustering, Modularity, and Diversity.Frontiers in cell and developmental biology · 2021
    Review
  15. Review
  16. The insulator functions of theScience advances · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Complete reconstitution of bypass and blocking functions in a minimal artificialProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Nikolay PostikaDepartment of the Control of Genetic Processes, Institute of Gene Biology Russian Academy of Sciences, Moscow, Russia.ORCID 0000-0002-2737-9781
Mario MetzlerBiozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0002-5400-2912
Markus AffolterBiozentrum, University of Basel, Basel, Switzerland.
Martin MüllerBiozentrum, University of Basel, Basel, Switzerland.
Paul SchedlDepartment of Gene Expression Regulation in Development, Institute of Gene Biology Russian Academy of Sciences, Moscow, Russia.
Pavel GeorgievDepartment of the Control of Genetic Processes, Institute of Gene Biology Russian Academy of Sciences, Moscow, Russia.ORCID 0000-0002-6509-3194
Olga KyrchanovaDepartment of the Control of Genetic Processes, Institute of Gene Biology Russian Academy of Sciences, Moscow, Russia.ORCID 0000-0002-6249-0418
Institute of Gene Biology · RUUniversity of Basel · CHPrinceton University · US

Funding

Genetic regulatory mechanism in development and differentiationR35GM126975 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 2018 to 2022
$3.0M
NIGMS NIH HHS R35 GM126975
6 · The paper itself

Abstract

Drosophila bithorax complex (BX-C) is one of the best model systems for studying the role of boundaries (insulators) in gene regulation. Expression of three homeotic genes, Ubx, abd-A, and Abd-B, is orchestrated by nine parasegment-specific regulatory domains. These domains are flanked by boundary elements, which function to block crosstalk between adjacent domains, ensuring that they can act autonomously. Paradoxically, seven of the BX-C regulatory domains are separated from their gene target by at least one boundary, and must "jump over" the intervening boundaries. To understand the jumping mechanism, the Mcp boundary was replaced with Fab-7 and Fab-8. Mcp is located between the iab-4 and iab-5 domains, and defines the border between the set of regulatory domains controlling abd-A and Abd-B. When Mcp is replaced by Fab-7 or Fab-8, they direct the iab-4 domain (which regulates abd-A) to inappropriately activate Abd-B in abdominal segment A4. For the Fab-8 replacement, ectopic induction was only observed when it was inserted in the same orientation as the endogenous Fab-8 boundary. A similar orientation dependence for bypass activity was observed when Fab-7 was replaced by Fab-8. Thus, boundaries perform two opposite functions in the context of BX-C-they block crosstalk between neighboring regulatory domains, but at the same time actively facilitate long distance communication between the regulatory domains and their respective target genes.

Indexed as

Genes, HomeoboxGenes, InsectAnimalsAnimals, Genetically ModifiedDrosophila melanogasterDrosophila ProteinsEnhancer Elements, GeneticFemaleHomeodomain ProteinsInsulator ElementsMaleModels, GeneticMutationNuclear ProteinsPromoter Regions, GeneticRegulatory Sequences, Nucleic Acidabd-A protein, DrosophilaAbd-B proteins, DrosophilaDrosophila ProteinsHomeodomain ProteinsNuclear ProteinsTranscription FactorsUbx protein, Drosophila

Identifiers

PMID30540750
PMCPMC6306242
OpenAlexW2904797951

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.