Evidence map›Paper›PMID 30539301›Full record

ArticleMolecular genetics and genomics : MGG2019

Full-length transcriptome and microRNA sequencing reveal the specific gene-regulation network of velvet antler in sika deer with extremely different velvet antler weight.

Pengfei Hu, Tianjiao Wang, Huamiao Liu, Jiaping Xu, Lei Wang, Pei Zhao, Xiumei Xing

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Pengfei HuState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Tianjiao WangState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Huamiao LiuState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Jiaping XuState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Lei WangState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Pei ZhaoState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China.
Xiumei XingState Key Laboratory for Molecular Biology of Special Economic Animals, Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China. xingxiumei2004@126.com.ORCID http://orcid.org/0000-0002-0684-5720
Chinese Academy of Agricultural Sciences · CN

Funding

Agricultural Science and Technology Innovation Program of China CAAS-ASTIP-201X-ISAPS
6 · The paper itself

Abstract

Velvet antler displays the fastest and most robust tissue proliferation in the animal world, it is a model for a complete organ development/regeneration, and alternative medicine, tonic made from velvet antler, was beneficial for human. The weight of velvet antler had high biomedical and economic value, but the related regulation mechanisms controlling velvet antler weight remain unclear. In this study, extremely heavy and light velvet antler groups were selected from a sika deer population of 100 individuals with extreme velvet antler weight. A combination of full-length transcriptome sequencing and microRNA sequencing to the proliferation zone in the tip of velvet antler was applied. A total of 55306 transcripts and 1082 microRNAs were identified. Some highly expressed genes (COL1A1, COL1A2, COL3A1, FN1, and ATP6) and microRNAs (miR-21, let-7i, and miR-27b) were highly correlated with the physiological and growth characteristics of velvet antlers. Among the 334 differentially expressed genes, we found that most of the genes were located in the developmental process, especially animal organ development process. It is exciting to see that more blood vessels were found in the growing tip of heavy velvet antler through histological observation, and GO term of blood vessel development was also significant different between two groups. The combination analysis with mRNA and microRNA data in velvet antler showed a specific regulation network involved in the development of bone, mesenchyme, cartilage, and blood vessel, and helped us clearly find out the candidate 14 genes and 6 microRNAs, which could be used for selecting significant DNA markers of velvet antler weight.

Indexed as

AnimalsAntlersDeerGene Expression Regulation, DevelopmentalGene Regulatory NetworksHumansMicroRNAsRegenerationTranscriptomeMicroRNAsDifferential expression genesMicroRNAsSika deerSingle-molecule real-time sequencingVelvet antler weight

Identifiers

PMID30539301
OpenAlexW2904245719

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.