Evidence map›Paper›PMID 30539259›Full record

ArticleApplied microbiology and biotechnology2019

International Space Station conditions alter genomics, proteomics, and metabolomics in Aspergillus nidulans.

Jillian Romsdahl, Adriana Blachowicz, Abby J Chiang, Yi-Ming Chiang, Sawyer Masonjones, Junko Yaegashi, Stefanie Countryman, Fathi Karouia, Markus Kalkum, Jason E Stajich and 2 more

Abstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  13. Review
  14. Journal of fungi (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Transcriptomic and genomic changes associated with radioadaptation inComputational and structural biotechnology journal · 2021
    Article
  17. Article
  18. Article
  19. Fitness of Outer Membrane Vesicles FromFrontiers in microbiology · 2020
    Article
  20. Metabolomic Analysis ofFrontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jillian RomsdahlDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, Rm 406A, Los Angeles, CA, 90089-9121, USA.
Adriana BlachowiczDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, Rm 406A, Los Angeles, CA, 90089-9121, USA.
Abby J ChiangDepartment of Molecular Imaging and Therapy, Beckman Research Institute of City of Hope, 1500 East Duarte Road, Duarte, CA, 91010, USA.
Yi-Ming ChiangDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, Rm 406A, Los Angeles, CA, 90089-9121, USA.
Sawyer MasonjonesDepartment of Microbiology & Plant Pathology and Institute of Integrative Genome Biology, University of California-Riverside, 900 University Avenue, Riverside, CA, 92521, USA.
Junko YaegashiDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, Rm 406A, Los Angeles, CA, 90089-9121, USA.
Stefanie CountrymanBioServe Space Technologies, University of Colorado, 429 UCB, Boulder, CO, 80309, USA.
Fathi KarouiaSpace Biosciences Division, NASA Ames Research Center, MS-239-4, Moffett Field, Mountain View, CA, 94035, USA.
Markus KalkumDepartment of Molecular Imaging and Therapy, Beckman Research Institute of City of Hope, 1500 East Duarte Road, Duarte, CA, 91010, USA.
Jason E StajichDepartment of Microbiology & Plant Pathology and Institute of Integrative Genome Biology, University of California-Riverside, 900 University Avenue, Riverside, CA, 92521, USA.
Kasthuri VenkateswaranBiotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA, 91101, USA.
Clay C C WangDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, 1985 Zonal Avenue, Rm 406A, Los Angeles, CA, 90089-9121, USA. clayw@usc.edu.ORCID http://orcid.org/0000-0003-2955-7569

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI XIWEI WU · 1985 to 2026
$86.3M
Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NASA 2012 Space Biology NNH12ZTT001N grant nos. 19-12829-26NCI NIH HHS P30 CA033572NIH HHS S10 OD016290
6 · The paper itself

Abstract

The first global genomic, proteomic, and secondary metabolomic characterization of the filamentous fungus Aspergillus nidulans following growth onboard the International Space Station (ISS) is reported. The investigation included the A. nidulans wild-type and three mutant strains, two of which were genetically engineered to enhance secondary metabolite production. Whole genome sequencing revealed that ISS conditions altered the A. nidulans genome in specific regions. In strain CW12001, which features overexpression of the secondary metabolite global regulator laeA, ISS conditions induced the loss of the laeA stop codon. Differential expression of proteins involved in stress response, carbohydrate metabolic processes, and secondary metabolite biosynthesis was also observed. ISS conditions significantly decreased prenyl xanthone production in the wild-type strain and increased asperthecin production in LO1362 and CW12001, which are deficient in a major DNA repair mechanism. These data provide valuable insights into the adaptation mechanism of A. nidulans to spacecraft environments.

Indexed as

AnthraquinonesAspergillus nidulansCarbohydrate MetabolismEnvironmentGene Expression Regulation, FungalGenes, FungalGenomicsMetabolomicsProteomicsSecondary MetabolismSpacecraftSpace FlightStress, PhysiologicalXanthonesAnthraquinonesasperthecinxanthoneXanthonesAspergillus nidulansGenomicsInternational Space StationMetabolomicsProteomics

Identifiers

PMID30539259
PMCPMC9098231

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.