Evidence map›Paper›PMID 30538335›Full record

ArticleNature immunology2019

Histone demethylase LSD1 is required for germinal center formation and BCL6-driven lymphomagenesis.

Katerina Hatzi, Huimin Geng, Ashley S Doane, Cem Meydan, Reed LaRiviere, Mariano Cardenas, Cihangir Duy, Hao Shen, Maria Nieves Calvo Vidal, Timour Baslan and 7 more

Abstract read
In one paragraph

Article in Nature immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
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  8. Role of lysine-specific demethylase 1 in immunotherapy of gastric cancer: An update.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2024
    Article
  9. Article
  10. Article
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  12. Article
  13. Strategies that regulate LSD1 for novel therapeutics.Acta pharmaceutica Sinica. B · 2024
    Review
  14. Article
  15. Review
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  17. Article
  18. Review
  19. Article
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Katerina HatziDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Huimin GengDepartment of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA.
Ashley S DoaneDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Cem MeydanInstitute for Computational Biomedicine, Dept. of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
Reed LaRiviereDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Mariano CardenasDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Cihangir DuyDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Hao ShenDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Maria Nieves Calvo VidalDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Timour BaslanCancer Biology and Genetics Program, Sloan-Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Helai P MohammadCancer Epigenetics Department, GlaxoSmithKline, Collegeville, PA, USA.
Ryan G KrugerCancer Epigenetics Department, GlaxoSmithKline, Collegeville, PA, USA.
Rita ShaknovichDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA.
Ann M HabermanDepartment of Laboratory Medicine, Department of Immunobiology Yale University School of Medicine, New Haven, CT, USA.
Giorgio InghiramiDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.
Scott W LoweCancer Biology and Genetics Program, Sloan-Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ari M MelnickDepartment of Medicine, Division of Hematology & Medical Oncology, Weill Cornell Medicine, New York, NY, USA. amm2014@med.cornell.edu.ORCID http://orcid.org/0000-0002-8074-2287
Cornell University · USMemorial Sloan Kettering Cancer Center · USGlaxoSmithKline (United States) · USUniversity of California, San Francisco · USYale University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI Camila dos Santos · 1985 to 2026
$116.8M
Targeting Epigenetic Circuits in B-Cell LymphomasR35CA220499 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MELNICK, ARI M. · 2018 to 2024
$7.2M
Targeting EZH2 in Germinal Center Derived B-Cell LymphomaR01CA187109 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MELNICK, ARI M. · 2014 to 2017
$1.8M
Role of histone demethylated LSD1 as an epigenetic dependency in lymphomaK99CA212276 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHATZI, KATERINA · 2016 to 2017
$298k
NCI NIH HHS K99 CA212276NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA187109NCI NIH HHS R35 CA220499
6 · The paper itself

Abstract

Germinal center (GC) B cells feature repression of many gene enhancers to establish their characteristic transcriptome. Here we show that conditional deletion of Lsd1 in GCs significantly impaired GC formation, associated with failure to repress immune synapse genes linked to GC exit, which are also direct targets of the transcriptional repressor BCL6. We found that BCL6 directly binds LSD1 and recruits it primarily to intergenic and intronic enhancers. Conditional deletion of Lsd1 suppressed GC hyperplasia caused by constitutive expression of BCL6 and significantly delayed BCL6-driven lymphomagenesis. Administration of catalytic inhibitors of LSD1 had little effect on GC formation or GC-derived lymphoma cells. Using a CRISPR-Cas9 domain screen, we found instead that the LSD1 Tower domain was critical for dependence on LSD1 in GC-derived B cells. These results indicate an essential role for LSD1 in the humoral immune response, where it modulates enhancer function by forming repression complexes with BCL6.

Indexed as

AnimalsB-LymphocytesCarcinogenesisCRISPR-Cas SystemsDNA, IntergenicGerminal CenterHistone DemethylasesHyperplasiaImmunological SynapsesIntronsLymphomaMiceMice, Inbred C57BLMice, KnockoutProto-Oncogene Proteins c-bcl-6Bcl6 protein, mouseDNA, IntergenicHistone DemethylasesKDM1a protein, mouseProto-Oncogene Proteins c-bcl-6

Identifiers

PMID30538335
PMCPMC6294324
OpenAlexW2902901300

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.