Evidence map›Paper›PMID 30538209›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques.

Noah Snyder-Mackler, Joaquín Sanz, Jordan N Kohn, Tawni Voyles, Roger Pique-Regi, Mark E Wilson, Luis B Barreiro, Jenny Tung

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 88 citations in OpenAlex.

  1. Pooled it
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  9. Animal Models Relevant for Geroscience: Current Trends and Future Perspectives in Biomarkers, and Measures of Biological Aging.The journals of gerontology. Series A, Biological sciences and medical sciences · 2024
    Review
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  12. DNA methylation signatures of early-life adversity are exposure-dependent in wild baboons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Noah Snyder-MacklerDepartment of Evolutionary Anthropology, Duke University, Durham, NC 27708; nsmack@uw.edu jt5@duke.edu.ORCID 0000-0003-3026-6160
Joaquín SanzDepartment of Biochemistry, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada H3T 1J4.
Jordan N KohnYerkes National Primate Research Center, Emory University, Atlanta, GA 30322.
Tawni VoylesDepartment of Evolutionary Anthropology, Duke University, Durham, NC 27708.
Roger Pique-RegiCenter for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48201.
Mark E WilsonYerkes National Primate Research Center, Emory University, Atlanta, GA 30322.
Luis B BarreiroDepartment of Genetics, CHU Sainte-Justine Research Center, Montreal, QC, Canada H3T 1C5.
Jenny TungDepartment of Evolutionary Anthropology, Duke University, Durham, NC 27708; nsmack@uw.edu jt5@duke.edu.ORCID 0000-0003-0416-2958
Duke University · USCentre Hospitalier Universitaire Sainte-Justine · CAEmory University · USWayne State University · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
T32 Administrative Supplement for Increase in Postdoc StipendsT32AG000139 · NIA · DUKE UNIVERSITY · PI LYNCH, SCOTT M. · 1987 to 2017
$4.0M
Supplement to AG057235: Stress and the Genome: Testing the Impact of Social Effects on Gene RegulationR01AG057235 · NIA · DUKE UNIVERSITY · PI BARREIRO, LUIS BRUNO, MICHOPOULOS, VASILIKI · 2017 to 2021
$2.9M
Stress and the Genome: Testing the Impact of Social Effects on Gene RegulationR01GM102562 · NIGMS · DUKE UNIVERSITY · PI BARREIRO, LUIS BRUNO, TUNG, JENNY · 2012 to 2016
$2.8M
Gene regulatory analysis of social integration and resilience during agingR00AG051764 · NIA · UNIVERSITY OF WASHINGTON · PI SNYDER-MACKLER, NOAH · 2017 to 2019
$746k
Gene regulatory analysis of social integration and resilience during agingK99AG051764 · NIA · DUKE UNIVERSITY · PI SNYDER-MACKLER, NOAH · 2016 to 2017
$255k
NIA NIH HHS K99 AG051764NIA NIH HHS R00 AG051764NIA NIH HHS R01 AG057235NIA NIH HHS T32 AG000139NIGMS NIH HHS R01 GM102562NIH HHS P51 OD011132
6 · The paper itself

Abstract

Low social status is an important predictor of disease susceptibility and mortality risk in humans and other social mammals. These effects are thought to stem in part from dysregulation of the glucocorticoid (GC)-mediated stress response. However, the molecular mechanisms that connect low social status and GC dysregulation to downstream health outcomes remain elusive. Here, we used an in vitro GC challenge to investigate the consequences of experimentally manipulated social status (i.e., dominance rank) for immune cell gene regulation in female rhesus macaques, using paired control and GC-treated peripheral blood mononuclear cell samples. We show that social status not only influences immune cell gene expression but also chromatin accessibility at hundreds of regions in the genome. Social status effects on gene expression were less pronounced following GC treatment than under control conditions. In contrast, social status effects on chromatin accessibility were stable across conditions, resulting in an attenuated relationship between social status, chromatin accessibility, and gene expression after GC exposure. Regions that were more accessible in high-status animals and regions that become more accessible following GC treatment were enriched for a highly concordant set of transcription factor binding motifs, including motifs for the GC receptor cofactor AP-1. Together, our findings support the hypothesis that social status alters the dynamics of GC-mediated gene regulation and identify chromatin accessibility as a mechanism involved in social stress-driven GC resistance. More broadly, they emphasize the context-dependent nature of social status effects on gene regulation and implicate epigenetic remodeling of chromatin accessibility as a contributing factor.

Indexed as

AnimalsBinding SitesChromatinChromatin Assembly and DisassemblyEpigenomicsFemaleGene Expression RegulationGlucocorticoidsLeukocytes, MononuclearMacaca mulattaReceptors, GlucocorticoidTranscription FactorsChromatinGlucocorticoidsReceptors, GlucocorticoidTranscription Factorschromatin accessibilitydominance rankepigenomicsgene regulationsocial status

Identifiers

PMID30538209
PMCPMC6347725
OpenAlexW2853491465

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.