Evidence map›Paper›PMID 30538201›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Structural-functional interactions of NS1-BP protein with the splicing and mRNA export machineries for viral and host gene expression.

Ke Zhang, Guijun Shang, Abhilash Padavannil, Juan Wang, Ramanavelan Sakthivel, Xiang Chen, Min Kim, Matthew G Thompson, Adolfo García-Sastre, Kristen W Lynch and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Nuclear speckle integrity and function require TAO2 kinase.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. SARS-CoV-2 Orf6 hijacks Nup98 to block STAT nuclear import and antagonize interferon signaling.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ke ZhangDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Guijun ShangDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Abhilash PadavannilDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Juan WangDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Ramanavelan SakthivelDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Xiang ChenDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Min KimDepartment of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Matthew G ThompsonDepartment of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104.
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Kristen W LynchDepartment of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104.
Zhijian J ChenDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Yuh Min ChookDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX 75390; Yuhmin.Chook@utsouthwestern.edu Beatriz.Fontoura@UTSouthwestern.edu.
Beatriz M A FontouraDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390; Yuhmin.Chook@utsouthwestern.edu Beatriz.Fontoura@UTSouthwestern.edu.

Funding

Structures and Mechanisms of Nuclear Import and ExportR01GM069909 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI CHOOK, YUH MIN · 2004 to 2020
$5.8M
Splicing and Nuclear Transport of Influenza Virus mRNAR01AI125524 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI COBB, MELANIE H., FONTOURA, BEATRIZ MA · 2016 to 2025
$5.6M
Chemical intervention of influenza virus RNA nuclear exportR33AI119304 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FONTOURA, BEATRIZ MA, GARCIA-SASTRE, ADOLFO · 2017 to 2019
$1.5M
NIAID NIH HHS R01 AI125524NIAID NIH HHS R33 AI119304NIGMS NIH HHS R01 GM069909
6 · The paper itself

Abstract

The influenza virulence factor NS1 protein interacts with the cellular NS1-BP protein to promote splicing and nuclear export of the viral M mRNAs. The viral M1 mRNA encodes the M1 matrix protein and is alternatively spliced into the M2 mRNA, which is translated into the M2 ion channel. These proteins have key functions in viral trafficking and budding. To uncover the NS1-BP structural and functional activities in splicing and nuclear export, we performed proteomics analysis of nuclear NS1-BP binding partners and showed its interaction with constituents of the splicing and mRNA export machineries. NS1-BP BTB domains form dimers in the crystal. Full-length NS1-BP is a dimer in solution and forms at least a dimer in cells. Mutations suggest that dimerization is important for splicing. The central BACK domain of NS1-BP interacts directly with splicing factors such as hnRNP K and PTBP1 and with the viral NS1 protein. The BACK domain is also the site for interactions with mRNA export factor Aly/REF and is required for viral M mRNA nuclear export. The crystal structure of the C-terminal Kelch domain shows that it forms a β-propeller fold, which is required for the splicing function of NS1-BP. This domain interacts with the polymerase II C-terminal domain and SART1, which are involved in recruitment of splicing factors and spliceosome assembly, respectively. NS1-BP functions are not only critical for processing a subset of viral mRNAs but also impact levels and nuclear export of a subset of cellular mRNAs encoding factors involved in metastasis and immunity.

Indexed as

Active Transport, Cell NucleusCell NucleusCrystallography, X-RayDimerizationHeterogeneous-Nuclear RibonucleoproteinsHumansInfluenza A virusInfluenza, HumanNuclear ProteinsPolypyrimidine Tract-Binding ProteinProtein BindingProtein DomainsRNA-Binding ProteinsRNA, MessengerRNA SplicingTranscription FactorsHeterogeneous-Nuclear RibonucleoproteinsINS1 protein, influenza virusIVNS1ABP protein, humanNuclear ProteinsPolypyrimidine Tract-Binding ProteinPTBP1 protein, humanRNA-Binding ProteinsRNA, MessengerTranscription FactorsViral Nonstructural Proteinsinfluenza virusKelchmRNA exportNS1 proteinsplicing

Identifiers

PMID30538201
PMCPMC6310826

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.