Evidence map›Paper›PMID 30536871›Full record

ArticleFEBS letters2019

Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis.

Johanna Krahmer, Greg S Goralogia, Akane Kubota, Argyris Zardilis, Richard S Johnson, Young Hun Song, Michael J MacCoss, Thierry Le Bihan, Karen J Halliday, Takato Imaizumi and 1 more

Abstract read
In one paragraph

Article in FEBS letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genes · 2024
    Review
  7. Frontiers in plant science · 2024
    Article
  8. Review
  9. Ectopic Expression ofInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Article
  12. GIpred: a computational tool for prediction of GIGANTEA proteins using machine learning algorithm.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  13. Clock-Controlled and Cold-InducedFrontiers in plant science · 2022
    Article
  14. Review
  15. Review
  16. Abscisic Acid and Flowering Regulation: Many Targets, Different Places.International journal of molecular sciences · 2020
    Review
  17. A sorghumPlant direct · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Johanna KrahmerSynthSys and School of Biological Sciences, University of Edinburgh, UK.
Greg S GoralogiaDepartment of Biology, University of Washington, Seattle, WA, USA.
Akane KubotaDepartment of Biology, University of Washington, Seattle, WA, USA.
Argyris ZardilisSynthSys and School of Biological Sciences, University of Edinburgh, UK.
Richard S JohnsonDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Young Hun SongDepartment of Biology, University of Washington, Seattle, WA, USA.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Thierry Le BihanSynthSys and School of Biological Sciences, University of Edinburgh, UK.
Karen J HallidayInstitute of Molecular Plant Sciences, University of Edinburgh, UK.
Takato ImaizumiDepartment of Biology, University of Washington, Seattle, WA, USA.
Andrew J MillarSynthSys and School of Biological Sciences, University of Edinburgh, UK.ORCID 0000-0003-1756-3654

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Molecular Mechanisms of Seasonal Time MeasurementR01GM079712 · NIGMS · UNIVERSITY OF WASHINGTON · PI IMAIZUMI, TAKATO · 2007 to 2022
$3.5M
Biotechnology and Biological Sciences Research Council BB/D019621Biotechnology and Biological Sciences Research Council BB/D019621/1Biotechnology and Biological Sciences Research Council BB/J009423/1NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM079712Wellcome Trust
6 · The paper itself

Abstract

The plant-specific protein GIGANTEA (GI) controls many developmental and physiological processes, mediating rhythmic post-translational regulation. GI physically binds several proteins implicated in the circadian clock, photoperiodic flowering, and abiotic stress responses. To understand GI's multifaceted function, we aimed to comprehensively and quantitatively identify potential interactors of GI in a time-specific manner, using proteomics on Arabidopsis plants expressing epitope-tagged GI. We detected previously identified (in)direct interactors of GI, as well as proteins implicated in protein folding, or degradation, and a previously uncharacterized transcription factor, CYCLING DOF FACTOR6 (CDF6). We verified CDF6's direct interaction with GI, and ZEITLUPE/FLAVIN-BINDING, KELCH REPEAT, F-BOX 1/LIGHT KELCH PROTEIN 2 proteins, and demonstrated its involvement in photoperiodic flowering. Extending interaction proteomics to time series provides a data resource of candidate protein targets for GI's post-translational control.

Indexed as

PhotoperiodProteomicsArabidopsisArabidopsis ProteinsCircadian ClocksFlowersGene Expression Regulation, PlantArabidopsis ProteinsGI protein, ArabidopsisZTL protein, Arabidopsisaffinity purificationArabidopsis thalianacircadian rhythmsflowering timequantitative mass spectrometry

Identifiers

PMID30536871
PMCPMC6373471

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.