Evidence map›Paper›PMID 30536855›Full record

ArticleBiotechnology and bioengineering2019

Engineering an EGFR-binding Gp2 domain for increased hydrophilicity.

Feifan Du, Max A Kruziki, Elizabeth J Zudock, Yi Zhang, Patrick S Lown, Benjamin J Hackel

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. High-throughput developability assays enable library-scale identification of producible protein scaffold variants.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Feifan DuDepartment of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, Minnesota.
Max A KruzikiDepartment of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, Minnesota.
Elizabeth J ZudockDepartment of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, Minnesota.
Yi ZhangDepartment of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, Minnesota.
Patrick S LownDepartment of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, Minnesota.
Benjamin J HackelDepartment of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, Minnesota.ORCID 0000-0003-3561-9463

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Douglas Yee · 1998 to 2026
$100.4M
Engineering Gp2 as a small ligand scaffoldR01EB023339 · NIBIB · UNIVERSITY OF MINNESOTA · PI HACKEL, BENJAMIN · 2017 to 2020
$1.3M
Enhanced molecular imaging agents via designed ligand chargeR21EB021511 · NIBIB · UNIVERSITY OF MINNESOTA · PI HACKEL, BENJAMIN · 2016 to 2017
$408k
NCI NIH HHS P30 CA077598NIBIB NIH HHS R01 EB023339NIBIB NIH HHS R21 EB021511
6 · The paper itself

Abstract

The Gp2 domain is a 45 amino-acid scaffold that has been evolved for specific, high-affinity binding towards multiple targets and was proven useful in molecular imaging and biological antagonism. It was hypothesized that Gp2 may benefit from increased hydrophilicity for improved physiological distribution as well as for physicochemical robustness. We identified seven exposed hydrophobic sites for hydrophilic mutations and experimentally evaluated single mutants, which yielded six mutations that do not substantially hinder expression, binding affinity or specificity (to epidermal growth factor receptor), and thermal stability. Eight combinations of these mutations improved hydrophilicity relative to the parental Gp2 clone as assessed by reverse-phase high-performance liquid chromatography (p < 0.05). Secondary structures and refolding abilities of the selected single mutants and all multimutants were unchanged relative to the parental ligand. A variant with five hydrophobic-to-hydrophilic mutations was identified with enhanced solubility as well as reasonable binding affinity ( K

Indexed as

Recombinant ProteinsCell Line, TumorErbB ReceptorsEscherichia coliHumansHydrophobic and Hydrophilic InteractionsModels, MolecularMutagenesis, Site-DirectedMutationProtein BindingProtein DomainsProtein StabilitySolubilityEGFR protein, humanErbB ReceptorsRecombinant ProteinsGp2hydrophilicityprotein engineeringsolubilitysynthetic ligand

Identifiers

PMID30536855
PMCPMC6358468

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.