Evidence map›Paper›PMID 30535594›Full record

ArticleJournal of neuro-oncology2019

Comprehensive genetic alteration profiling in primary and recurrent glioblastoma.

Beth K Neilsen, Richard Sleightholm, Rodney McComb, Shakti H Ramkissoon, Jeffrey S Ross, Robert J Corona, Vincent A Miller, Matthew Cooke, Michele R Aizenberg

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of neuro-oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Drug-resistantSurgical neurology international · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Growth pattern of experimental glioblastoma.Histology and histopathology · 2020
    Article
  15. A Glioblastoma Genomics Primer for Clinicians.Medical research archives · 2020
    Article
  16. Review
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Beth K NeilsenFred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA.
Richard SleightholmFred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA.
Rodney McCombDepartment of Pathology, University of Nebraska Medical Center, Omaha, NE, USA.
Shakti H RamkissoonFoundation Medicine, Inc., Cambridge, MA, USA.
Jeffrey S RossFoundation Medicine, Inc., Cambridge, MA, USA.
Robert J CoronaDepartment of Pathology, SUNY Upstate Medical University, Syracuse, NY, USA.
Vincent A MillerFoundation Medicine, Inc., Cambridge, MA, USA.
Matthew CookeFoundation Medicine, Inc., Cambridge, MA, USA.
Michele R AizenbergFred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA. maizenberg@unmc.edu.ORCID http://orcid.org/0000-0001-6689-8907
Foundation Medicine (United States)University of Nebraska Medical Center · USSUNY Upstate Medical University · USNebraska Medical Center · US

Funding

Discovering Vulnerabilities in Ras-driven CancersF30CA203397 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI NEILSEN, BETH · 2016 to 2019
$165k
National Cancer Institute F30 CA203397
6 · The paper itself

Abstract

introductionGlioblastoma (GBM) is heterogeneous and underlying genomic profiles influence evolution, resistance, and therapeutic responses. While extensive knowledge regarding genomic profiling of primary GBM exists, there remains a lack of understanding of genomic differences in recurrent GBM.

methodsWe used the FoundationOne® comprehensive genomic profiling assay (CGP) to analyze ten matched primary and recurrent GBM. Genomic alterations (GA) were compared to the cancer database Catalogue of Somatic Mutations in Cancer (COSMIC).

resultsAll matched tumor pairs demonstrated differences in GA between the primary and recurrence including one resected without any intervening therapy. This suggests that time and/or therapeutic intervention contribute to GA. Although mutations were common to both the primary and recurrence, the percent reads varied substantially suggesting clonal expansions and contractions. For example, EGFR mutations were significantly expanded in three patients, and CNAs were increased in two patients at recurrence. Four genes that were commonly altered in both primary and recurrent GBM were more prevalent in our cohort than reported in COSMIC: CDKN2A (86% vs. 53%) and CDKN2B (86% vs. 54%) deletions, EGFR activating mutation (52% vs. 10%) or amplification (81% vs. 45%), and TERT mutation (95% vs. 51%). Lastly, PI3K pathway activating mutations were also commonly seen in our cohort (67%).

conclusionsCGP revealed that GA identified in GBM changed over time and with treatment. Mutations in TERT, CDKN2A/CDKN2B, EGFR, and PI3K pathway were commonly observed in both primary and recurrent GBM revealing their prognostic and therapeutic potential. This may have important implications for individualized therapies and needs further evaluation.

Indexed as

GenotypeMutationAgedBrain NeoplasmsDatabases, GeneticDNA Copy Number VariationsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGlioblastomaHumansMaleMiddle AgedNeoplasm Recurrence, LocalPrognosisEGFRGenomic profilingGlioblastomaRecurrent glioblastoma

Identifiers

PMID30535594
OpenAlexW2904535054

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.