Evidence map›Paper›PMID 30535416›Full record

ArticleJournal of insect science (Online)2018

Evolutionary Analysis of the Highly Conserved Insect Odorant Coreceptor (Orco) Revealed a Positive Selection Mode, Implying Functional Flexibility.

Alan Soffan, Siti Subandiyah, Hirokazu Makino, Tomoaki Watanabe, Tokumasa Horiike

Open access · goldAbstract read
In one paragraph

Article in Journal of insect science (Online), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Locusts adopt IPScience advances · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Identification of 2,4-Di-International journal of molecular sciences · 2023
    Article
  14. Mutagenesis of Odorant Receptor CoreceptorInternational journal of molecular sciences · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Evolution of the Insect PPK Gene Family.Genome biology and evolution · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Alan SoffanDepartment of Plant Protection, Faculty of Agriculture, UniversitasGadjahMada, Yogyakarta, Indonesia.
Siti SubandiyahDepartment of Plant Protection, Faculty of Agriculture, UniversitasGadjahMada, Yogyakarta, Indonesia.
Hirokazu MakinoMolecular evolution and Bioinformatics Laboratory, Graduate School of Integrated Science and Technology, Shizuoka University, Japan.
Tomoaki WatanabeMolecular evolution and Bioinformatics Laboratory, Department of Biological and Environmental Science, Shizuoka University, Japan.
Tokumasa HoriikeMolecular evolution and Bioinformatics Laboratory, Department of Biological and Environmental Science, Shizuoka University, Japan.
Shizuoka University · JPUniversitas Gadjah Mada · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Odorant coreceptor (Orco) represents one of the essential genes in the insect olfactory system, which facilitates signal transduction and heterodimerization with different odorant receptors (Ors) in the insect antennal dendritic membrane. Evolutionary analysis by detecting positive selection is important to examine the functional flexibility of Orco that potentially supports insect survival. The maximum likelihood codon substitution model was applied using CODEML program as implemented in PAML ver 4.9e package across 59 Orco codon sequences available from GenBank. These sequences represented five major insect orders and two reproductive systems (holometabola and nonholometabola). In the site model that identified common ω values for Orco, it was clearly shown that Orco was under strong purifying selection, indicated by the ω value that was far from 1 (ω: 0.03). However, in to the branch model, positive selection was detected to be acting on Dipteran lineages, whereas in the branch-site model, several sites were under significant positive selection occurring in the following four clades: Coleoptera, Diptera, Lepidoptera, and Psocodea. The typical evolutionary mode acting on Orco was consistent with the entropy value [H(x)], confirming that 48.9% of the Orco site was under conservation (H(x) < 0.5), whereas 26.9% of the Orco sites was under high variation (H(x) > 1). These findings confirmed that Orco genes are generally highly conserved and can possibly be used for the manipulation of insect pest control programs. However, positive selection that acts on certain lineages suggested future adaptive evolutionary ability of Orco to anticipate flexible functions for successful olfactory processes.

Indexed as

Evolution, MolecularSelection, GeneticAnimalsConserved SequenceInsectaReceptors, OdorantReceptors, Odorant

Identifiers

PMID30535416
PMCPMC6287053
OpenAlexW2904987006

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.