Evidence map›Paper›PMID 30535324›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2019

DNA methylation dynamics in the germline of the marsupial tammar wallaby, Macropus eugenii.

Teruhito Ishihara, Danielle Hickford, Geoff Shaw, Andrew J Pask, Marilyn B Renfree

Open access · goldAbstract readComparative Study
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Imprinted X chromosome inactivation in marsupials: The paternal X arrives at the egg with a silent DNA methylation profile.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. GigaByte (Hong Kong, China) · 2024
    Article
  5. Article
  6. Article
  7. Article
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  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Teruhito IshiharaSchool of BioSciences, The University of Melbourne, Melbourne, VIC, Australia.
Danielle HickfordSchool of BioSciences, The University of Melbourne, Melbourne, VIC, Australia.
Geoff ShawSchool of BioSciences, The University of Melbourne, Melbourne, VIC, Australia.
Andrew J PaskSchool of BioSciences, The University of Melbourne, Melbourne, VIC, Australia.
Marilyn B RenfreeSchool of BioSciences, The University of Melbourne, Melbourne, VIC, Australia.
The University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parent specific-DNA methylation is the genomic imprint that induces mono-allelic gene expression dependent on parental origin. Resetting of DNA methylation in the germ line is mediated by a genome-wide re-methylation following demethylation known as epigenetic reprogramming. Most of our understanding of epigenetic reprogramming in germ cells is based on studies in mice, but little is known about this in marsupials. We examined genome-wide changes in DNA methylation levels by measuring 5-methylcytosine expression, and mRNA expression and protein localization of the key enzyme DNA methyltransferase 3 L (DNMT3L) during germ cell development of the marsupial tammar wallaby, Macropus eugenii. Our data clearly showed that the relative timing of genome-wide changes in DNA methylation was conserved between the tammar and mouse, but in the tammar it all occurred post-natally. In the female tammar, genome-wide demethylation occurred in two phases, I and II, suggesting that there is an unidentified demethylation mechanism in this species. Although the localization pattern of DNMT3L in male germ cells differed, the expression patterns of DNMT3L were broadly conserved between tammar, mouse and human. Thus, the basic mechanisms of DNA methylation-reprogramming must have been established before the marsupial-eutherian mammal divergence over 160 Mya.

Indexed as

DNA MethylationEpigenesis, GeneticAnimalsDNADNA (Cytosine-5-)-MethyltransferasesFemaleGene Expression RegulationGerm CellsHumansMacropodidaeMaleMiceDNADNA (Cytosine-5-)-Methyltransferases5-methylcytosineDNA methylationDNMT3Lepigenetic reprogramminggerm cell

Identifiers

PMID30535324
PMCPMC6379045
OpenAlexW2905005530

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.