ArticleFrontiers in neuroinformatics2018
Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data.
Article in Frontiers in neuroinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Bridging Model and Experiment in Systems Neuroscience with Cleo: The Closed-Loop, Electrophysiology, and Optophysiology Simulation Testbed.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026Article
- Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed.bioRxiv : the preprint server for biology · 2025Article
- NESTML: a generic modeling language and code generation tool for the simulation of spiking neural networks with advanced plasticity rules.Frontiers in neuroinformatics · 2025Article
- A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets.Cell reports methods · 2024Article
- Virtual Intelligence: A Systematic Review of the Development of Neural Networks in Brain Simulation Units.Brain sciences · 2022Review
- A System-on-Chip Based Hybrid Neuromorphic Compute Node Architecture for Reproducible Hyper-Real-Time Simulations of Spiking Neural Networks.Frontiers in neuroinformatics · 2022Article
- Mapping and Validating a Point Neuron Model on Intel's Neuromorphic Hardware Loihi.Frontiers in neuroscience · 2022Article
- Mapping and Validating a Point Neuron Model on Intel's Neuromorphic Hardware Loihi.Frontiers in neuroinformatics · 2022Article
- Simulating the Cortical Microcircuit Significantly Faster Than Real Time on the IBM INC-3000 Neural Supercomputer.Frontiers in neuroscience · 2021Article
- Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation.Frontiers in neuroinformatics · 2021Article
- Stochastic rounding and reduced-precision fixed-point arithmetic for solving neural ordinary differential equations.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2020Article
- Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data.Frontiers in neuroinformatics · 2018Article
- Reproducing Polychronization: A Guide to Maximizing the Reproducibility of Spiking Network Models.Frontiers in neuroinformatics · 2018Article
Corrections and comments
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Authors and funding
5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The reproduction and replication of scientific results is an indispensable aspect of good scientific practice, enabling previous studies to be built upon and increasing our level of confidence in them. However, reproducibility and replicability are not sufficient: an incorrect result will be accurately reproduced if the same incorrect methods are used. For the field of simulations of complex neural networks, the causes of incorrect results vary from insufficient model implementations and data analysis methods, deficiencies in workmanship (e.g., simulation planning, setup, and execution) to errors induced by hardware constraints (e.g., limitations in numerical precision). In order to build credibility, methods such as verification and validation have been developed, but they are not yet well-established in the field of neural network modeling and simulation, partly due to ambiguity concerning the terminology. In this manuscript, we propose a terminology for model verification and validation in the field of neural network modeling and simulation. We outline a rigorous workflow derived from model verification and validation methodologies for increasing model credibility when it is not possible to validate against experimental data. We compare a published minimal spiking network model capable of exhibiting the development of polychronous groups, to its reproduction on the SpiNNaker neuromorphic system, where we consider the dynamics of several selected network states. As a result, by following a formalized process, we show that numerical accuracy is critically important, and even small deviations in the dynamics of individual neurons are expressed in the dynamics at network level.
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