Evidence map›Paper›PMID 30534005›Full record

ArticleProteome science2018

Proteome modifications on tomato under extreme high light induced-stress.

Débora Parrine, Bo-Sen Wu, Bilal Muhammad, Keith Rivera, Darryl Pappin, Xin Zhao, Mark Lefsrud

Abstract read
In one paragraph

Article in Proteome science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. iScience · 2021
    Article
  5. Article
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Débora Parrine1Department of Bioresource Engineering, Macdonald Campus, McGill University, 21,111 Lakeshore Boulevard, Sainte-Anne-de-Bellevue, Quebec H9X 3V9 Canada.
Bo-Sen Wu1Department of Bioresource Engineering, Macdonald Campus, McGill University, 21,111 Lakeshore Boulevard, Sainte-Anne-de-Bellevue, Quebec H9X 3V9 Canada.
Bilal Muhammad2Department of Animal Science, Macdonald Campus, McGill University, 21,111 Lakeshore Boulevard, Sainte-Anne-de-Bellevue, QC H9X 3V9 Canada.
Keith Rivera3Cold Spring Harbor Laboratory, Cold Spring Harbor, NY USA.
Darryl Pappin3Cold Spring Harbor Laboratory, Cold Spring Harbor, NY USA.
Xin Zhao2Department of Animal Science, Macdonald Campus, McGill University, 21,111 Lakeshore Boulevard, Sainte-Anne-de-Bellevue, QC H9X 3V9 Canada.
Mark Lefsrud1Department of Bioresource Engineering, Macdonald Campus, McGill University, 21,111 Lakeshore Boulevard, Sainte-Anne-de-Bellevue, Quebec H9X 3V9 Canada.ORCID 0000-0002-7667-4269

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAbiotic stress reduces photosynthetic yield and plant growth, negatively impacting global crop production and is a major constraint faced by agriculture. However, the knowledge on the impact on plants under extremely high irradiance is limited. We present the first in-depth proteomics analysis of plants treated with a method developed by our research group to generate a light gradient using an extremely intense light.

methodsThe method consists of utilizing light emitting diodes (LED) to create a single spot at 24,000 μmol m

resultsA total of 3994 proteins were identified at 1% false discovery rate and matched additional quality filters. Hierarchical clustering analysis resulted in four types of patterns related to the protein expression, with one being directly linked to the increased LED irradiation. A total of 37 proteins were found unique to the least damaged leaf zone, while the medium damaged zone had 372 proteins, and the severely damaged presented unique 1003 proteins. Oxygen evolving complex and PSII complex proteins (PsbH, PsbS, PsbR and Psb28) were found to be abundant in the most damaged leaf zone. This leaf zone presented a protein involved in the salicylic acid response, while it was not abundant in the other leaf zones. The mRNA level of PsbR was significantly lower (1-fold) compared the control in the most damaged zone of the leaf, while Psb28 and PsbH were lower (1-fold) in the less damaged leaf zones. PsbS mRNA abundance in all leaf zones tested presented no statistically significant change from the control.

conclusionsWe present the first characterization of the proteome changes caused by an extreme level of high-light intensity (24,000 μmol m

Indexed as

ChlorosisLEDPhotoinhibitionPsb28PsbSSalicylic acidWavelength

Identifiers

PMID30534005
PMCPMC6260845

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.