Evidence map›Paper›PMID 30533692›Full record

ArticleMicrobiology resource announcements2018

Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology.

Jonathan E Pekar, Patrick Phaneuf, Richard Szubin, Bernhard Palsson, Adam Feist, Jonathan M Monk

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. A complete circular genome of ΦX174 hostMicrobiology resource announcements · 2025
    Article
  2. VirulentFrontiers in microbiology · 2021
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jonathan E PekarBioengineering Department, University of California San Diego, La Jolla, California, USA.
Patrick PhaneufBioengineering Department, University of California San Diego, La Jolla, California, USA.
Richard SzubinBioengineering Department, University of California San Diego, La Jolla, California, USA.
Bernhard PalssonBioengineering Department, University of California San Diego, La Jolla, California, USA.
Adam FeistBioengineering Department, University of California San Diego, La Jolla, California, USA.
Jonathan M MonkBioengineering Department, University of California San Diego, La Jolla, California, USA.

Funding

Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host ImmunityU01AI124316 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 2016 to 2020
$10.2M
NIAID NIH HHS U01 AI124316
6 · The paper itself

Abstract

Escherichia coli C is a commonly used strain in the bioprocessing industry, but despite its utility, the publicly available sequence of the E. coli C genome has gaps and 4,180 ambiguous base calls. Here, we present an updated, high-quality, unambiguous genome sequence with no assembly gaps.

Identifiers

PMID30533692
PMCPMC6256561

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.